PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092408.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 423aa    MW: 47568.7 Da    PI: 5.9206
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092408.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000155072123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++Cp C+k++++   L  H r+H
  XP_010092408.1 50 FVCPVCNKRYKSGKALGGHKRMH 72
                    89*******************99 PP

2zf-C2H213.30.00024105125323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C  C k F++  +L  H+r+H
  XP_010092408.1 105 CLLCEKIFPSMKSLFGHMRSH 125
                     999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.97E-849125No hitNo description
SMARTSM003550.0225072IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-95072IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3695077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SMARTSM003550.2103125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
PfamPF139124.8E-5105127IPR007087Zinc finger, C2H2
SMARTSM003550.03331353IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.847331358IPR007087Zinc finger, C2H2
PfamPF139122.4E-11331355IPR007087Zinc finger, C2H2
PROSITE patternPS000280333353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MLKMNPKPDP TTTDHDMIDG HGQNMMINKF KPADHVQVED HDQDEELLPF VCPVCNKRYK  60
SGKALGGHKR MHNLPPKNNN KRKAIIHDDE EEDEEGKEEE DVPICLLCEK IFPSMKSLFG  120
HMRSHPDRGW RGIQPPPSAV SEDHRMIGDD DDDFLEETPE KRRPVLMSSS NSPKTPTPPK  180
LNWSSGTAKR VNGSSTTSGS SSSSSSSGAS NFKYHAPWKL DNAMKEAAIN LMLLTHLKPR  240
SESLSVLDRI NKSEGEVKEE GEEEEEEKPG DKEEYYDLRR IKKKHLKSKK RVKKMKLADL  300
DEEEEKEGQV ITNTSSNNRA KLPASSSIHQ YVCSVCERSF PSYQALGGHR SSHNKKHIKI  360
NNKHVSNSDA DGDDSSRSAE AMDDKGDVIE DDPAPSEKDD SKIFNDFDLN EIPHSEDGTS  420
NCK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010092408.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092408.20.0suppressor protein SRP40
TrEMBLW9R1900.0W9R190_9ROSA; Zinc finger protein ZAT3
STRINGXP_010092408.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.17e-16C2H2 family protein