PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092406.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 321aa    MW: 35650.2 Da    PI: 7.8314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092406.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-05106126323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C  C ksF++   L +H+r+H
  XP_010092406.1 106 CFLCEKSFRSMKALCSHMRVH 126
                     999****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.855678IPR007087Zinc finger, C2H2
PfamPF139122.7E-75678IPR007087Zinc finger, C2H2
SMARTSM003550.485678IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
PROSITE profilePS501579.016104126IPR007087Zinc finger, C2H2
SMARTSM003550.069104126IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.26E-8105126No hitNo description
PfamPF139120.0027106127IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SuperFamilySSF576673.26E-8196223No hitNo description
PfamPF139127.2E-9200223IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658201228IPR007087Zinc finger, C2H2
SMARTSM003550.36201223IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEAEKNGGKK SKNGVNPKPD DDHDQHHVDN YDDQVRMMNN PDEVQVPDQD QELLPFVCRV  60
CKKRFKSGKG LGGHKTMHDL PPKNNKRKAI IQDNDDEEEE EDVPICFLCE KSFRSMKALC  120
SHMRVHPDRG WKGIQPLSAV PGGHYVIDDD NSSPVSAKKG SGNRTTSGCS SSSEGSELLS  180
VLDRINKNKG KTKKEEGNNH YVCNVCNSSF TSYQALGGHK SGHNGTKNFS KSKIDSRKRK  240
LSDSDSDDHG ADLSRSADKT AAIFTDDKDD VSRIKGDSKI NSHLSNSNAH SEYDSSRSEK  300
NDRKGVYKQK LETTNSLLIN Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010092406.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092406.10.0zinc finger protein 62
TrEMBLW9RCW60.0W9RCW6_9ROSA; Zinc finger protein ZAT3
STRINGXP_010092406.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.13e-15C2H2 family protein