PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092247.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 442aa    MW: 49483 Da    PI: 5.453
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092247.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000166688123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++Cp C+k++++   L  H r+H
  XP_010092247.1 66 FVCPVCNKRYKSGKALGGHKRMH 88
                    89*******************99 PP

2zf-C2H218.74.8e-06126146323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     Cp C ksF++  +L  H+r+H
  XP_010092247.1 126 CPLCEKSFPSMKSLFGHMRSH 146
                     ********************9 PP

3zf-C2H212.30.0005360382123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C++sF++   L  H ++H
  XP_010092247.1 360 YVCSVCKRSFPSYQALGGHRSSH 382
                     9**************99999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.87E-96588No hitNo description
PfamPF139122.7E-96688IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3696693IPR007087Zinc finger, C2H2
SMARTSM003550.0226688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576675.87E-9119146No hitNo description
PROSITE profilePS501578.933124146IPR007087Zinc finger, C2H2
SMARTSM003550.006124146IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-8125148IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576672.89E-5358386No hitNo description
PROSITE profilePS501579.91360387IPR007087Zinc finger, C2H2
PfamPF139129.6E-12360384IPR007087Zinc finger, C2H2
SMARTSM003550.026360382IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280362382IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEEEKEDANN QGRLCLKLKI TPKPEPTTAD QDMINGHDQK MMINKLKPDD HEQVEDHVQD  60
EELLPFVCPV CNKRYKSGKA LGGHKRMHNL PPKNNNNSTK PSNKRKAIIH DNDEEDDEEE  120
EDVPICPLCE KSFPSMKSLF GHMRSHPDRG WRGIQPPPQP SSSTVPDQDH PMIDDDDDSS  180
EATPKKRRPV LLSTSNSPKT PSPASDDLKW PITAKRGSGN RITTSGSSSS SSGGLSLADV  240
PWMEKTAKEA VFDLMMLACQ KPGARSELLT ILDRINKNKG KAKKEEEKEE EEEENSGDEK  300
DYYMMKRIKN KSMKSKKIIK KMKLADLEEE EGEEGQVIRT TSTSNSAKSP ASSSGRGRQY  360
VCSVCKRSFP SYQALGGHRS SHNKKNIKII INSRLSNSDD SSRSEEATDD KDNVEDDQVS  420
AENDDSKIVK DFDLNEVPTS ED
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010092247.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092247.10.0zinc finger protein ZAT4
TrEMBLW9QY410.0W9QY41_9ROSA; Zinc finger protein ZAT2
STRINGXP_010092247.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.14e-15C2H2 family protein