PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092196.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family LBD
Protein Properties Length: 177aa    MW: 20389.9 Da    PI: 7.4606
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092196.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601292.1e-4051051100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +CaaCk+lrrkC++dC+l+pyfp ++p++fa+vh+++Gasnv+k+l++l+ ++ r +a++sl++eA+ r++dPvyG+vg+i++l++q++++++el
  XP_010092196.1   5 RCAACKYLRRKCPPDCTLSPYFPPNDPQRFACVHRIYGASNVVKMLQQLDSHDlRARAADSLFFEAQRRIEDPVYGCVGIITQLHHQIHEAETEL 99 
                     6************************************************99999***************************************** PP

          DUF260  95 allkee 100
                     a++++e
  XP_010092196.1 100 AKTRAE 105
                     *99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.6614106IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-395103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSPRRCAACK YLRRKCPPDC TLSPYFPPND PQRFACVHRI YGASNVVKML QQLDSHDLRA  60
RAADSLFFEA QRRIEDPVYG CVGIITQLHH QIHEAETELA KTRAELALRS SGTALTSHVQ  120
DQTYHLHHHD HHYHNRDHHD QLLEIMESDL NNLLQGQSSI HEQSRFGPTT KAPNWLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-35611212117LOB family transfactor Ramosa2.1
5ly0_B4e-35611212117LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00381DAPTransfer from AT3G26620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010092196.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092196.11e-131LOB domain-containing protein 23
SwissprotP594676e-51LBD23_ARATH; LOB domain-containing protein 23
TrEMBLW9RC851e-130W9RC85_9ROSA; Uncharacterized protein
STRINGXP_010092196.11e-131(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.15e-53LOB domain-containing protein 23