PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010091280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NAC
Protein Properties Length: 822aa    MW: 93199.3 Da    PI: 6.9982
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010091280.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.91.7e-3162671633128
             NAM  33 vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                       ke ++y+++ + Lp    +++ ewyfF +rd+k ++g r+nratk+gyWk+tgkd++v++ +++++g+kktLv+y+grap+g +tdWvmheyr
  XP_010091280.1 626 EQKEENLYRHKKSFLP----SRDPEWYFFGPRDRKCPNGFRTNRATKAGYWKSTGKDRRVTC-QNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYR 715
                     4566777888877887....4688**************************************.8999***************************9 PP

             NAM 128 l 128
                     l
  XP_010091280.1 716 L 716
                     8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.104.7E-1025171IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.3823064IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.4326898IPR002885Pentatricopeptide repeat
PfamPF015350.87197IPR002885Pentatricopeptide repeat
PfamPF128541.6E-6104132IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.293105139IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.6E-4110137IPR002885Pentatricopeptide repeat
PfamPF130411.1E-7136181IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.2E-4138165IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.875140166IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.623204234IPR002885Pentatricopeptide repeat
PfamPF015351.1209234IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.703235269IPR002885Pentatricopeptide repeat
PfamPF015350.0051237267IPR002885Pentatricopeptide repeat
PfamPF130411.6E-8344390IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.18344377IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.985378412IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.057413443IPR002885Pentatricopeptide repeat
PfamPF015350.069418444IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.26444474IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.7E-10445484IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007567.2E-5446471IPR002885Pentatricopeptide repeat
PfamPF015351.7E-6446471IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.155476506IPR002885Pentatricopeptide repeat
PfamPF015350.014481506IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.761512542IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.001516539IPR002885Pentatricopeptide repeat
PfamPF015350.0039516540IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.7E-10520536IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.193544578IPR002885Pentatricopeptide repeat
PROSITE profilePS5100536.233582739IPR003441NAC domain
PfamPF023653.6E-16634716IPR003441NAC domain
SuperFamilySSF1019414.05E-38641739IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MLRLTTRARR VSVRRFSSGN LPTLSRLTPE ADNLLDRVRV LATRGRLKEA LSLFYAIIEA  60
DDKPRPHCHQ TYATLFHECA RHGRLREGLC LHRHMVAHNP MNRPDTFVTN HLINMYCKFG  120
HLDYAHQLFD EMPHRNHVSW TALISGYAQR GHSSECFQLF SAMLAECRPN EFAFASVLSS  180
CREGEGRFGR QVHALALKMC LDACLYVANT LIMMYNKCHG GNEAWSVFNS MEYRNTVTWN  240
SMIAAFQFHG LGARGIDLFI QMHHMGISFD RATLLSVFTS FCESADKEMK ACFRFCLQLH  300
CLTVKTGFLS EVKVATALMK AYSDLGGNAV DCYRVFLETS CHRDIVSWTS IMTIFAERDP  360
ERALLLFSQL CQEGLAPDWY TFSIVLKACA GLVTERHAAA VHSRVIKSGF EGDTVLTNSL  420
IHAYARCASI SMSKKVFDEI EERDVVSWNS MLKAYALHGR AREALHLFSE MNLEPDSATL  480
VALLCACSHA GLVEDGIKIF DCMRENYGIV PQIDHYACMV DMYGRAGKIH EAEKLIGQMP  540
MEPDSVVWSA LLGSCKKHGE TGLAKLASDK LKELEPRSSL GYVQMSNIYY SNREVICSKL  600
DGLIRQLKEM GYVPETSLSL HDIEEEQKEE NLYRHKKSFL PSRDPEWYFF GPRDRKCPNG  660
FRTNRATKAG YWKSTGKDRR VTCQNRAIGM KKTLVYYRGR APQGIRTDWV MHEYRLDDKE  720
CEDSSGIQDS YALCRVFKKN GICSEIEEQG QCSISQIESS SQGVINESEM SPDIPTASSL  780
CVDQDDDKDD SWMQFITDDD SWCHNSNAAF GGDDISRLAF TN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-494155616330PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010091280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018046.10.0pentatricopeptide repeat-containing protein At1g71420
SwissprotQ9C9H90.0PP114_ARATH; Pentatricopeptide repeat-containing protein At1g71420
TrEMBLW9R9R10.0W9R9R1_9ROSA; Pentatricopeptide repeat-containing protein
STRINGXP_010091280.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.19e-71NAC domain containing protein 57
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]