PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NAC
Protein Properties Length: 210aa    MW: 24141.2 Da    PI: 4.593
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090830.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.65.1e-32111261128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelv ++L +kv   +++  ++i+++di+ ++Pw+L+ ++ ++ +  yfFsk         ++ r+t++g+Wk+   d++++++
  XP_010090830.1  11 LPPGFRFCPTDEELVLHFLYHKVFLLPCHP-NIIPDIDICLHDPWELNGMALSSGNVHYFFSKV--------KQDRVTANGFWKELDIDEPIFTS 96 
                     79*************************999.89**************95555566777888876........45799****************** PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g++vg+kk Lvfy + ++   +t+Wvm+e++l
  XP_010090830.1  97 SGNKVGVKKYLVFYINGES---ETNWVMEEFNL 126
                     **************55444...5********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-398165IPR003441NAC domain
PROSITE profilePS5100534.7211167IPR003441NAC domain
PfamPF023659.1E-2112126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGDDIGSHEN LPPGFRFCPT DEELVLHFLY HKVFLLPCHP NIIPDIDICL HDPWELNGMA  60
LSSGNVHYFF SKVKQDRVTA NGFWKELDID EPIFTSSGNK VGVKKYLVFY INGESETNWV  120
MEEFNLCHNS FTTTTAAAAA APAAYNKRQR KQKLMDCIWV LCRVHERKDI TDNSRQTFCH  180
DDDDGTELSC LDEVFFSLLD DDLEEISLQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-261016916167NO APICAL MERISTEM PROTEIN
1ut4_B8e-261016916167NO APICAL MERISTEM PROTEIN
1ut7_A8e-261016916167NO APICAL MERISTEM PROTEIN
1ut7_B8e-261016916167NO APICAL MERISTEM PROTEIN
4dul_A8e-261016916167NAC domain-containing protein 19
4dul_B8e-261016916167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090830.11e-158NAC domain-containing protein 104
SwissprotQ8GWK61e-60NC104_ARATH; NAC domain-containing protein 104
TrEMBLW9QLZ01e-156W9QLZ0_9ROSA; NAC domain-containing protein 29
STRINGXP_010090830.11e-157(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-53xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]