PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089914.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NAC
Protein Properties Length: 230aa    MW: 26941.9 Da    PI: 10.1003
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089914.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.46.2e-32101372128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknr.atk.sgyWkatgkdke 91 
                      +G+rF Pt+ elv++yL++k+++k+++  +  ++ev++y++ P++L++++ +  +e e+yfF+k+  k+++gkr +r +t+ sgyW++t ++ +
  XP_010089914.1  10 SRGIRFFPTEVELVHYYLANKATNKPFQDPTNrFQEVELYNYTPHQLNERYGGlhKEAEMYFFVKKVLKHRKGKRLERrITNnSGYWRSTTSEID 104
                     68************************7775555**************9655443356699***************988655459*********** PP

             NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++   g+lvg +k+Lv+y  ++ +  kt+W+m eyrl
  XP_010089914.1 105 IKL-AGNLVGHRKILVYY--SRDE-GKTNWLMYEYRL 137
                     ***.999***********..3344.38********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-363155IPR003441NAC domain
PROSITE profilePS5100535.7119156IPR003441NAC domain
PfamPF023655.6E-1911137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEIRPWNPLS RGIRFFPTEV ELVHYYLANK ATNKPFQDPT NRFQEVELYN YTPHQLNERY  60
GGLHKEAEMY FFVKKVLKHR KGKRLERRIT NNSGYWRSTT SEIDIKLAGN LVGHRKILVY  120
YSRDEGKTNW LMYEYRLPDN NMVQGDDWLL CQVYLNEMEE TKYKTQLNLA LKSAAMINFL  180
TKTANKQGNP RLSSAPTMKS KQLDSDRIVP SHLGSISTDL LFKKAKSAPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-2211624171NO APICAL MERISTEM PROTEIN
1ut4_B2e-2211624171NO APICAL MERISTEM PROTEIN
1ut7_A2e-2211624171NO APICAL MERISTEM PROTEIN
1ut7_B2e-2211624171NO APICAL MERISTEM PROTEIN
4dul_A2e-2211624171NAC domain-containing protein 19
4dul_B2e-2211624171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089914.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089914.11e-173NAC transcription factor 29
TrEMBLW9QJK61e-172W9QJK6_9ROSA; NAC domain-containing protein 29
STRINGXP_010089914.11e-173(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13633523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-24NAC-like, activated by AP3/PI