PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089649.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TCP
Protein Properties Length: 375aa    MW: 41424.9 Da    PI: 8.6853
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089649.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.15.6e-33602103127
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaessss 80 
                     g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ +                  +++as++++++   
  XP_010089649.1  60 GGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLpmplagnfslltpreanAATTASQANEDQGFL 154
                     78*************************************************************88888888777655433111111222222222 PP

             TCP  81 sasnsssg.........kaaksaa.kskksqksaasalnlak.esrakararare.rtr 127
                     +++n+  +         + ++++  ++  +++s++   +l k  s++ ar++a++  tr
  XP_010089649.1 155 KNNNN--NmsaiewelgSTSRQNFwTNTTTSTSTS-SDALWKaRSKEVARETANNsTTR 210
                     22222..2557777776333333322222222222.23333324555555555553333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-3161206IPR005333Transcription factor, TCP
PROSITE profilePS5136931.46961119IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MINNSKETEF PPREEGNSSH EIGKVNSSTK VSSSAATSAN PTPWLRLKDP RIVRVSRVFG  60
GKDRHSKVCT IRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN AAKHEIDELP  120
PLPMPLAGNF SLLTPREANA ATTASQANED QGFLKNNNNN MSAIEWELGS TSRQNFWTNT  180
TTSTSTSSDA LWKARSKEVA RETANNSTTR SEVEKEEGNH EGSNNLTQRT TNNHPFFPGM  240
LNNIAHMPHG VSYRWEPPNY PLLSHFGGAG HGLNITSQSD QHLQSLNVMS LQPSTLSLST  300
GSPYTTTTQT YFPSHSAAAS GVELVDSRQV NHFHMLSSNV VQNLLPNTIR PFHFGANNSK  360
LVCYPPNDNG SDQQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1866120155Putative transcription factor PCF6
5zkt_B1e-1866120155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089649.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089649.10.0transcription factor TCP13
TrEMBLW9QTL10.0W9QTL1_9ROSA; Uncharacterized protein
STRINGXP_010089649.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-46plastid transcription factor 1