PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family AP2
Protein Properties Length: 519aa    MW: 56508.6 Da    PI: 6.5877
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087870.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.7e-17178227155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_010087870.1 178 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 227
                     78*******************......55************************997 PP

2AP244.24.7e-14270320155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t++eAa+a+++a+ k +g
  XP_010087870.1 270 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDTEQEAARAYDKAAIKCNG 320
                     89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-16178237IPR016177DNA-binding domain
PfamPF008476.1E-9178227IPR001471AP2/ERF domain
SMARTSM003808.8E-33179241IPR001471AP2/ERF domain
PROSITE profilePS5103217.794179235IPR001471AP2/ERF domain
CDDcd000181.15E-11179237No hitNo description
Gene3DG3DSA:3.30.730.104.7E-17179236IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17270330IPR016177DNA-binding domain
CDDcd000183.77E-26270330No hitNo description
PfamPF008478.0E-10270320IPR001471AP2/ERF domain
SMARTSM003801.1E-32271334IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-17271329IPR001471AP2/ERF domain
PROSITE profilePS5103216.226271328IPR001471AP2/ERF domain
PRINTSPR003674.3E-6272283IPR001471AP2/ERF domain
PRINTSPR003674.3E-6310330IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MLDLNVNVVA ADSTCDEEEA EMVIMEVREG SRSAPMEDSG SPNSSVVNAE FEAPNSSNAG  60
DEVLDSNSNN TEALIFDILK KEKDGLEDRI SISPSPPGFV TRSFFPVASG EAERCVATAA  120
VSGYLSSSSR PQWLNLSFAD SAGAGQVAPA PAAPVELRVM QQKQQVKKSR RGPRSRSSQY  180
RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFNVSDYE  240
EDVKQMKNLS KEEFVQILRR QSTGFARGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL  300
FDTEQEAARA YDKAAIKCNG REAVTNFEHS TYQGEIILDS NAQGIDHNLD LNLGISPPSV  360
EPKGKDSLGE SRFHWNACEV PNRVKPMIDG QSPHVIAVTS NHTSATCSGI YPGFLSKHEE  420
RASATDHQKR AVEAVNSSPR FLNWAWKIHG SNGSTATSNG VTAMPVFSNA ASSGFSSSIT  480
SAAPSATSPP QNLQNTFAPN SASLTCRPPT FTEAEYQTP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296251e-123KP229625.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF02) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087870.10.0floral homeotic protein APETALA 2 isoform X1
SwissprotB8AXC31e-102AP21_ORYSI; APETALA2-like protein 1
TrEMBLW9QLI30.0W9QLI3_9ROSA; Floral homeotic protein APETALA 2
STRINGXP_010087870.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-108related to AP2.7