PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087101.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 366aa    MW: 41159.1 Da    PI: 5.0112
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087101.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.42.6e-34521422101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++ ws++g sfvv+d+++f+ ++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll++
  XP_010087101.1  52 FLTKTYDMVDDPTTNRIVAWSRDGGSFVVWDPHSFSVNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFVRGQRHLLRN 137
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     ++r++
  XP_010087101.1 138 VRRRR 142
                     ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3846135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6148141IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-3548141IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-3152141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-205275IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-20103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MNYLYPVKGE YPVASSSSSS SIGDGGGDGA AAAMMALPQP MEGLHDVGPP PFLTKTYDMV  60
DDPTTNRIVA WSRDGGSFVV WDPHSFSVNL LPRYFKHNNF SSFVRQLNTY GFRKIDPDRW  120
EFANEGFVRG QRHLLRNVRR RRGPSSQPLI PSDQQQAAAL GPCVELGRFG PDGEIDRLRR  180
DKQVLMMELV KLRHQQQNTR AHLQAMEQRL QGTEMKQQQM MAFLARAMQN PAFLQQLVQQ  240
KERRKALEEA MTKKRRRPID QGPSTSSGSS EVGPTSAIKM EPLDHVVGDY GFEVSELEAL  300
ALEMQGFGKA RKEEGDEEEL EPLESGDREL DEGFWEELFS EGVKGSDDED VNVLADRFDY  360
LGSSPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-255014127129Heat shock factor protein 1
5d5v_B5e-255014127129Heat shock factor protein 1
5d5v_D5e-255014127129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128141RGQRHLLRNVRRRR
2242256RRKALEEAMTKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087101.10.0Heat stress transcription factor A-6b
SwissprotQ9LUH81e-128HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLW9QXL80.0W9QXL8_9R
STRINGVIT_00s0179g00150.t011e-166(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-113heat shock transcription factor A6B