PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010086998.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TCP
Protein Properties Length: 498aa    MW: 54149.2 Da    PI: 7.7899
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010086998.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.48.9e-37782412135
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec 73 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  +i el+++                       +++sa+ +
  XP_010086998.1  78 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDSIAELPSLnssfpdtpkqlsdekrpsvgkeqGFDSAEVV 172
                     689*************************************************************9999999988888888888777766666555 PP

             TCP  74 ...eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmriknk 135
                         ++ + + +++++++ + +++a+s+ s++s+ s l+l++      r kar+rarer ++++ ++n+
  XP_010086998.1 173 eleLDQGEANYQQQNQQHLSLSKSACSSTSETSKGSGLSLSRseirVNRVKARERARERAAKDKEKENS 241
                     76644444444444555556666667777777777777777753336669********98888777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-4279238IPR005333Transcription factor, TCP
PROSITE profilePS5136930.90480138IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.441218238IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MEVEEIQAQA CNNNNSTTKF PRNKLGQKGG HDHHYPGDED DLGDQIKRPN TGPTAIDGGN  60
RLRGWHHSSR IIRVSRASGG KDRHSKVWTS KGLRDRRVRL SVTTAIQFYD LQDRLGYDQP  120
SKAVEWLINA ASDSIAELPS LNSSFPDTPK QLSDEKRPSV GKEQGFDSAE VVELELDQGE  180
ANYQQQNQQH LSLSKSACSS TSETSKGSGL SLSRSEIRVN RVKARERARE RAAKDKEKEN  240
SDSRIPPPPL HNHHHHHHHQ NINPISQSPS FTELLTGGIS NVNTNSNNNN DSSSPTTASD  300
QPNLFHKGST AMATATATAM QMDYFTTGLL GLSSTRNHHH HHSSGFAGLP MAMPMPQPFS  360
VVSSGGDGHA AAEALPPQFS FVPEQLIATT SSQPNGSGGD YSLNFSISSS GLAGFNRGTL  420
QSNSSPSSFL PHLQRFASPI DGTTNVPFFI GAAAAASPME NHHHHHNHHQ FPAGFDGRLQ  480
LYYGDGGRHS DQKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2385139155Putative transcription factor PCF6
5zkt_B3e-2385139155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010086998.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086998.10.0transcription factor TCP2
RefseqXP_024017961.10.0transcription factor TCP2
RefseqXP_024017968.10.0transcription factor TCP2
TrEMBLW9QCB80.0W9QCB8_9ROSA; Uncharacterized protein
STRINGXP_010086998.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2