PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010086812.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 555aa    MW: 61569.7 Da    PI: 5.9779
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010086812.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS261.23.7e-801685472374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL  cA+a+++g+++++q+lL  l+elas +gdp++Rla++ ++AL +++++s+s+ ++a   p + ++ +s    ++l  fsevsP++ f +
  XP_010086812.1 168 EQLLNPCATAITEGNFTRVQHLLFVLKELASHTGDPNHRLAFHGLRALTHHISSSGSTSSSAStGPAAFASAESRFFQKSLIKFSEVSPWFAFPN 262
                     689***************************************************87777766535556665556666666666************ PP

            GRAS  96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg........skeeleetgerLakfAeelgvpfe 177
                      +aN+ Il+ + +e    + +Hi+D+++s+G+QWp Ll+aL+sRp ++pp +RiT++  ++++              +  +rL  fA++++++++
  XP_010086812.1 263 NIANSSILQLLTEEsdrtRNLHILDIGVSHGVQWPILLEALTSRPgGPPPLVRITVIPGSSTTesedtpfsIGPPGDNFSSRLLGFAKSMNINLQ 357
                     **********99998777889************************55566*******88776667777776667788999*************** PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfd 269
                      n l  + l++l+ + ++ +++E+l+++ +++lh+l    +++++er+e+Lk ++++ Pk +++++++++++s+   +F +rf++ ++y + ++d
  XP_010086812.1 358 MNRLDNQPLQNLNSQIIDSSEEETLIICAQFRLHYLN---HNVPDERTEFLKSLRKMDPKGLILSDNNVECSSSncgDFTARFSRRVDYLWRFLD 449
                     ***9999*****************************8...7888888********************98774443449***************** PP

            GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                     s+++ +    + r + Er+l++ e+ ++++++g++    +e +ekW er++ aGF   +l+e+a + a++llrk++ ++++rv+e++g + l Wk
  XP_010086812.1 450 STSSAF----KGRESEERRLMEGEAAKALTNRGEM----NEGKEKWCERMRGAGFVGEALGEDAIDGARALLRKYDgNWEMRVDEKDGFAGLWWK 536
                     **8886....78888888889999******99999....9************************************9999*************** PP

            GRAS 364 drpLvsvSaWr 374
                     ++p+ ++S W+
  XP_010086812.1 537 GQPVSFCSLWK 547
                     **********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.055141526IPR005202Transcription factor GRAS
PfamPF035141.3E-77168547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MTSEEPEPNP TSDHIMDWLE DSVSFLPSFL DDPYNSGEIS EINGYQWWDE SQDIAQDLIN  60
IRETSLNCPS AAATISTTTK PPNAAIYNNL PLPSLSKKRK SVEEPIPKPS QNNQKKNHGR  120
RINQAKDGDA AVEEAVPIKK SVGNKKSSSK ATGNNGNNGN NKDGRWAEQL LNPCATAITE  180
GNFTRVQHLL FVLKELASHT GDPNHRLAFH GLRALTHHIS SSGSTSSSAS TGPAAFASAE  240
SRFFQKSLIK FSEVSPWFAF PNNIANSSIL QLLTEESDRT RNLHILDIGV SHGVQWPILL  300
EALTSRPGGP PPLVRITVIP GSSTTESEDT PFSIGPPGDN FSSRLLGFAK SMNINLQMNR  360
LDNQPLQNLN SQIIDSSEEE TLIICAQFRL HYLNHNVPDE RTEFLKSLRK MDPKGLILSD  420
NNVECSSSNC GDFTARFSRR VDYLWRFLDS TSSAFKGRES EERRLMEGEA AKALTNRGEM  480
NEGKEKWCER MRGAGFVGEA LGEDAIDGAR ALLRKYDGNW EMRVDEKDGF AGLWWKGQPV  540
SFCSLWKLDK KVSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B5e-3516354783473Protein SHORT-ROOT
5b3h_B3e-3516354729419Protein SHORT-ROOT
5b3h_E3e-3516354729419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010086812.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086812.10.0nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLW9QBW90.0W9QBW9_9ROSA; Uncharacterized protein
STRINGXP_010086812.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-169GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]