PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013903778.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family bHLH
Protein Properties Length: 348aa    MW: 37219.2 Da    PI: 6.0651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013903778.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.3e-1367115455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++  rE+ RR++iN++f eL +l+ ++   + +K +K ++L++A++ +++Lq
  XP_013903778.1  67 NKASREKARREKINDRFVELAQLVEPN---KEPKTDKLTVLQEAIRTVQQLQ 115
                     5678***********************...*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-1562131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.2463114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-966119No hitNo description
PfamPF000105.7E-1167115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1468136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-1169120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MPAVAPLAQQ DLDAAALAGA TTSSGKGRKR TKQLDDVDSD ELSDEDEEGG RRCGKKGRAP  60
GSDAARNKAS REKARREKIN DRFVELAQLV EPNKEPKTDK LTVLQEAIRT VQQLQVENHQ  120
LKQLNKFLEE KAANLERDRA QAMFFQMQSG VLQQQGGGMA GGGMAAGGMG GGGMMMQQPV  180
GGMMMGPPGM MGMMQPAGMM TQQQQVVPPD VQALSRAPSG STQPAKLLQQ DQQQTAQQQQ  240
QPQPPQQQQP SQQQPQLQQQ QSLAQPLPSM WQQQPAGPDP QAAAQQQVML PPGFAPPVDS  300
KAMMAAAGGA MMSSGGMGQG GMPMYWQSMV PPTMLDANQD SLLRPPAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00372DAPTransfer from AT3G23210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013903778.10.0Transcription factor bHLH34
TrEMBLA0A0D2LDH80.0A0A0D2LDH8_9CHLO; Transcription factor bHLH34
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP564977
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23210.11e-16bHLH family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]