PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013896976.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C3H
Protein Properties Length: 1169aa    MW: 120532 Da    PI: 10.9341
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013896976.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-0911331157226
                      -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                      + ++C++f r G C++Gd C+F+H+
  XP_013896976.1 1133 RSRPCQYFNRPGSCRHGDDCSFMHV 1157
                      569*********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.930.104.8E-6296377IPR017923Transcription factor IIS, N-terminal
PROSITE profilePS513199.485306385IPR017923Transcription factor IIS, N-terminal
SuperFamilySSF476769.16E-6310379IPR017923Transcription factor IIS, N-terminal
Gene3DG3DSA:4.10.1000.106.5E-811271156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-511291158IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-511311158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.11711311159IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-711331157IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1169 aa     Download sequence    Send to blast
MLDEPMSPGD SDSTDDEEPL SVRFAQRQSI VQVQESKQRT QGAPASDDEG SASDASGNDA  60
ANGASSTSSS SSGSGSDSSD ESSSADDDDN DAGSRLAKRR RRSGSSDGGG SAAGGAAGVK  120
RRTRRPSHYP RFNSKDRCGK CHTCLNPQMK KACITRREEY DQKIRRQQEQ DQGGQNASPR  180
PRKRKAATKN GAAATAAAPA PPPPPSSQPP QPPPPQQQQQ IERAQAKRQP KPAPAPPAAP  240
ESLAAYEGIL ASLIDHSGGV RPADAPALVA QLPRFTTAGS RRLALLVLGL TRERGLAAFM  300
AAGGADALAG WLAEARPRAA EGSKEAAALI VDVLKAVARL PVDMAFLKAS PITKAVGGLR  360
KHPVPAVEAE AKACVDQLYK RASAGSGAAD AAAAGRAPPA AKRAKTDDQA KAAAGAGGRH  420
PSASAAGAAS SIHLLSENDL FKPAAPKPKP AVQPQPPKVR RAARVRLGLA LSADGGRLER  480
EQGCVPGRVK PQAALVFNTG SAARPATTAR APQAAGVQRM DAAEARQLAA AAAANGRAPA  540
AVGAGRQQQQ KPQGQQEVVS ARIVVREDGS GVDLQLLLQK ANQEQHQAPA SAANSGMARI  600
GARPARPGFG NSAARPGAGA PPAAAAAGAA GVTRIGGVSR IGAPSSVTAR LLAAPALTGA  660
ALRAQRAAAQ VPEADQEPRR KAGSGKRVSW QADMRLVNVR WFRKEDAPQQ ARGDSLYTDE  720
ELRKAAHSHP TFSEAARQEH MREREFLQQM HHTEQHQQQH HQQHLQQQQQ QQQQQQQQQQ  780
QLHDNARRMR AAVAAVAPSV AWVPAPPVAL CADWGVAAGE DSSEAPRLQQ LAAGRPATAA  840
VFPAPSTPSE PPEHLRGRGA AAAGAPAVVI PWEPAPAAAP APVAVPTGAP QPQPLQQQQQ  900
QQQPAVQLAG GGYVVHPAAH GGMATVVLPA PAPAPAPAPA PVPVPAPAPA PAAAPPPGLQ  960
AVLSSLASIL PQATASATPP AGLAAPGAHS GLQLRPAPGA APAPSLFGSH SQLQPPRPAA  1020
PLFPPQQPQQ QQPQPQLQLF GAPPGQPGYT PVQHPLQGPS QQQQQQQRPP HHFGPPQQHN  1080
PQFAPAPGGF GPPHHGGPPP RGSGGGGGGP GPFQSHGRPG PGGPGGPRPP NFRSRPCQYF  1140
NRPGSCRHGD DCSFMHVRPG ESRDVREGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013896976.10.0hypothetical protein MNEG_10005
TrEMBLA0A0D2MAJ10.0A0A0D2MAJ1_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP481033
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]