PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013892411.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family bHLH
Protein Properties Length: 426aa    MW: 44221.4 Da    PI: 10.1274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013892411.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.5e-143076455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     h ++E+rRR riN++++ Lr+l+P+a     ++ + a+ Le++++YI +L+
  XP_013892411.1 30 RHQAAEQRRRTRINERLDLLRKLVPHA-----ERANTASFLEEVIKYIDHLK 76
                    599***********************9.....8*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.9542675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-132987IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-142986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-113075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-93179No hitNo description
SMARTSM003531.7E-73281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MPAAKTQASN RGGGRTRSGD SRSSSAYASR HQAAEQRRRT RINERLDLLR KLVPHAERAN  60
TASFLEEVIK YIDHLKKRNL DLERALRAAT TTGGGAGRGA SGDAAPSVGA CEAPPPRAAR  120
ATAPGGAAAG FGSTAAAELG PEQVLQYQQQ QQQQEEQQRQ LAEDAPVPMA APLPLPLPLP  180
LPLPPTLDLE RLAGALLPPP QQQQQASAGG LEPLSQALLQ GALANPALLA NPVALQQLLA  240
VHSLAQQQQR EREQQQQAQQ QQLAAQLLLQ HLQQQQLEQQ RRQQQQTQQL LQQHSQQQQT  300
QRSSGGGGSS GAAGGSTRTF GETLPPELLQ LLREAAPRTP PAVPGLATSL DLTALSSLTA  360
AASGDPAGVG AAPLAQLAAQ PAAAGCALAA AAGAKRGAPA FAAPGAGSEE QDSAGAPKKR  420
QALQQA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013892411.10.0hypothetical protein MNEG_14571
TrEMBLA0A0D2LUT80.0A0A0D2LUT8_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP566588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-09BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]