PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00582.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family FAR1
Protein Properties Length: 602aa    MW: 68285 Da    PI: 8.3235
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00582.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR199.53.6e-3154145291
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r++tr+gCka+l vk +++gkw+v+ ++ eHnHel+p
  Migut.O00582.1.p  54 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKIQDSGKWVVSGFVREHNHELVP 145
                       9***************************************998888545677889***********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-2954145IPR004330FAR1 DNA binding domain
PfamPF105516.0E-21266342IPR018289MULE transposase domain
PfamPF044347.2E-12381427IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.276393429IPR007527Zinc finger, SWIM-type
SMARTSM005759.1E-10404431IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MGGASPNDAN SIGSGSGGDA TSFFSLHTYL PDGDIDLEPY EGMEFESEES AKAFYNSYAR  60
RVGFSTRVSS SRRSRKDGAI IQRSFVCAKE GFRNLNEKRT KDREIKRPRT VTRVGCKASL  120
SVKIQDSGKW VVSGFVREHN HELVPPDQVH CLRSHRQISG PAKTLIDTLQ AAGMGPRRIM  180
SVLVKEYGGI SKVGFTEVDC RNYMRNNRQR NMEGDIQLLL DYLKQKQSEN PSFFYAIQGD  240
EDQYTGNVFW ADPKSRSDYN HFGDTVTFDT TYRSNRYRLP FVPFTGLNHH GQPVLFGCAF  300
LINESEASFV WLFKTWLSAM FGRSPLSITT EHDSVIRSAI MQKQASEFYT RKLFTRFQEE  360
LVSTLTFTAS KVDDNGEVTT YRVAKFGEEH KFYHVNFNVL EMKASCSCRM FEFSGLLCRH  420
VLAVFRVTNV LTLPSYYISK RWTRNAKSSV VLEERAIDPF NGYLESHTVR YNTLRHEAFK  480
FVDEGAESVE SYNVAMAVLM EASNKVAFAV KNEGKASVNN GPMRNKSSYC RSEGEGSSTQ  540
QLSEGDMDQK INELSMDLEC ANRKCEVYRT NLLSLLKDIE DHKQRLSIEV QNIKLSMKDG  600
L*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00582.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829668.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0K9RV790.0A0A0K9RV79_SPIOL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-177FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]