PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N03328.1.p
Common NameLOC105972895, MIMGU_mgv1a004523mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ARF
Protein Properties Length: 523aa    MW: 57262.4 Da    PI: 5.7512
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N03328.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.14.5e-25121223199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+ltpsd+++ g +++p+++a+ +         ++ +   ltl+d++++ We+++iyr++++r++lt+GW++Fv+a++L +gD+ vF++++
  Migut.N03328.1.p 121 FSKILTPSDANNGGGFSVPRSCADMIfppldfaADPPVQ--NLTLKDTNNNAWEFRHIYRGTPRRHLLTTGWSKFVNAKRLVAGDSAVFMRKQ 211
                       88*********************999*****97666666..6************************************************766 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        s+ el+++v+r+
  Migut.N03328.1.p 212 -STDELYIGVRRA 223
                       .88889****997 PP

2Auxin_resp77.92.6e-26241323283
        Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       +++a ++++Fev+Y+P  ++++Fvvk+ekv +a+++++++GmR+kma+e +dss+ ++ sGt+++vs+ ++  W +S+W +L+
  Migut.N03328.1.p 241 IENAVKGMAFEVLYCPTFGSPDFVVKAEKVCEATRTNWTAGMRVKMAVEADDSSRLTWsSGTIAAVSCPNTGPWCGSPWGLLQ 323
                       66788999***********************************************************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-30112232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-33118224IPR015300DNA-binding pseudobarrel domain
CDDcd100178.51E-23120222No hitNo description
PfamPF023626.6E-23121223IPR003340B3 DNA binding domain
SMARTSM010192.5E-20121224IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155121224IPR003340B3 DNA binding domain
PfamPF065071.2E-21241323IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MSNFSSSSSA VATASEVDAS IWRAVAGACV QIPPPNSFVY YFPQGHLEHC SFSTAFINSF  60
NFALGRPFIY CQVLSIRFFS NHLSDQVFVK ITLQPINTYG PCPVSNAGGD RENNQGDVVL  120
FSKILTPSDA NNGGGFSVPR SCADMIFPPL DFAADPPVQN LTLKDTNNNA WEFRHIYRGT  180
PRRHLLTTGW SKFVNAKRLV AGDSAVFMRK QSTDELYIGV RRAQRFGGIE GQNGGEALRA  240
IENAVKGMAF EVLYCPTFGS PDFVVKAEKV CEATRTNWTA GMRVKMAVEA DDSSRLTWSS  300
GTIAAVSCPN TGPWCGSPWG LLQMTWDEPE SMRNVNRVSP WQVEYLDPTL MLNPNFPPLK  360
KLKLLSYSDM LLSAGEGEIP FPTAEFNSPL FNASIQGARL DPVYIPTTTT TNSQVSKEIP  420
DKNEGEPERE TVSTVLSIGS SYSDKDNVSP PSQSSVASAT KLVRENSFQL FGQIIQMPQP  480
GEDGACCSNA VSEENPVIDH QLPSPSARVQ QQQRFRRPSD KS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-651734451388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N03328.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853330.10.0PREDICTED: auxin response factor 17
TrEMBLA0A022Q7N30.0A0A022Q7N3_ERYGU; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95601924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-104auxin response factor 17