PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02436.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family YABBY
Protein Properties Length: 188aa    MW: 20751.6 Da    PI: 9.887
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02436.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY197.65.4e-6121582168
             YABBY   2 dvfssseqvCyvqCnfCntilavsvPstsl.fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                       +v+ +se+vCyv+CnfCnt+lavsvP +s+ +++v vrCGhC++llsvn+    + l  ++  + + ++  +    ++ + + s +e++++++
  Migut.N02436.1.p   2 SVDAASERVCYVHCNFCNTVLAVSVPCSSMlSNIVRVRCGHCSNLLSVNMGSLLHSLHLQDT-NFQKQPATAGSSSTTCKRFGSLMEMTTTTK 93 
                       78899*********************9996269*******************9999988885.444444444444444444544444433322 PP

             YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                       ++++       ++  +p       PP krqrvPsaynrfikeeiqrikasnP++ hreafs+aaknWahfP+i +
  Migut.N02436.1.p  94 HHEQR-----PTTTTTP-----KCPPLKRQRVPSAYNRFIKEEIQRIKASNPEMRHREAFSTAAKNWAHFPDINN 158
                       22222.....2223333.....589**********************************************9965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.4E-636157IPR006780YABBY protein
SuperFamilySSF470959.29E-899155IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.9E-5113155IPR009071High mobility group box domain
CDDcd000842.30E-4114150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSVDAASERV CYVHCNFCNT VLAVSVPCSS MLSNIVRVRC GHCSNLLSVN MGSLLHSLHL  60
QDTNFQKQPA TAGSSSTTCK RFGSLMEMTT TTKHHEQRPT TTTTPKCPPL KRQRVPSAYN  120
RFIKEEIQRI KASNPEMRHR EAFSTAAKNW AHFPDINNYG LKLGANKLAK LDHHADAAGG  180
DRSTHRS*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02436.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3727834e-41KT372783.1 Mentha spicata YABBY family protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838499.11e-140PREDICTED: axial regulator YABBY 5-like
SwissprotQ9XFB02e-56YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A022R7P19e-99A0A022R7P1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.14e-50YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]