PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02416.1.p
Common NameMIMGU_mgv1a001288mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family FAR1
Protein Properties Length: 867aa    MW: 97426.3 Da    PI: 7.8067
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02416.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.81.4e-1254127290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       fY +YA+++GFs+r +   +sk     t+++f C k g  +               +r gC a+l+++ + ++kw+vtk+ + H+H+++
  Migut.N02416.1.p  54 FYADYARDMGFSIRERF-DRSKAPAMGTSQEFLCCKDGMMKG--------------DRAGCGAMLRIESRGEKKWVVTKFAKLHSHTVV 127
                       9************9886.556678889***********9876..............4789**************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-954127IPR004330FAR1 DNA binding domain
PfamPF105517.3E-28261353IPR018289MULE transposase domain
PROSITE profilePS5096611.189539575IPR007527Zinc finger, SWIM-type
PfamPF044346.6E-11539573IPR007527Zinc finger, SWIM-type
SMARTSM005755.0E-8550577IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MGQRGGVTDA GHENYNNGGS MDAFGSSLVQ DEGRSFPEPH IGMEFDSENA AKMFYADYAR  60
DMGFSIRERF DRSKAPAMGT SQEFLCCKDG MMKGDRAGCG AMLRIESRGE KKWVVTKFAK  120
LHSHTVVNHS KLHYLRPKRH FAATANNVAG NFQGMDVVPS GVMYVSVDGN SIPAEMNHAG  180
KTMPASGGLT HTGKNIGSLG NSSRRTLGRD AQNLLDYFKK MQAENAGFYY AIQLDEENRM  240
ANAFWAEARS RTAYSHFGDA VVLDTTYRSN QYKVPFAPFT GVNHHGQTIL FGCALLLDES  300
EATFVWLFKT FLAAMNDRAP VSLTTDKDRA IRAAVAQVFP EVCHCVNKWH VLREGQGRMA  360
NVCTVHPNFQ MELYNCINMT ETIEEFESFW VSILDKYDLR RNDWLQSIYD ARTQWVPVYF  420
RDSFFAAMFP SPGFESSFLD GYVNQQTTLP MFFRQYKRAV ENSFEREVEA DFDTICTSPL  480
LRTPSPMEKQ AANLYTKRIF LKFQEELVET FVYTANRVDG DGHNSTYRVA KFEDNRKAYF  540
VSLNIAEMKA NCSCKMFEYS GILCRHVLTV FTVTNVLTLP SHYILNRWTR NARNAVNLAD  600
ECSELQGNES LTTRYNNLCK EAIRFAEEGA ITSETYSAAL ISLREGGKKV ASVKKGVAKI  660
APYSSQVSGV GYDDRRTSIA NQETTPLLWP RQDEIMRRFN LNDAGVSSQP ILDSSGPLMA  720
PVSLNRDSGQ TDMLVVPCLK TMTWVMENKN STPANRVAVI NLKLQDYGRT PAGESEVKFS  780
LSRVSLEPLL RSMAYISEQL STPANKVAFL NLKLQDTETM SGESEVKFQV SRDTLGAMLR  840
SMAYIREQLS NPMDPKQDNP AKRPRK*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02416.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838476.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X2
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A022R8E10.0A0A022R8E1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]