PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01873.1.p
Common NameLOC105951759, MIMGU_mgv1a001358mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family FAR1
Protein Properties Length: 835aa    MW: 94939 Da    PI: 6.6893
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01873.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.56.7e-1662136290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        Y++YA++vGF++ + +  +s+ +g i++ +f Cs+e +++++ ++              C+a+l+++ +++++w+vtk++++HnH+l+
  Migut.N01873.1.p  62 LYDTYARRVGFTTHVGQYIRSNPDGPIVSLEFFCSREVYKRKNIES--------------CNAMLRIESKDSENWVVTKFVEDHNHSLV 136
                       7**************************************9998877..............**************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1262136IPR004330FAR1 DNA binding domain
PfamPF105512.1E-30260352IPR018289MULE transposase domain
PfamPF044344.4E-11527571IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.288537573IPR007527Zinc finger, SWIM-type
SMARTSM005752.5E-7548575IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MDDKVVEVDM EKRQRNGKSQ TENNEDVAEN LSGNSTNQAE DENKNKPYIG MEFDSQESAK  60
DLYDTYARRV GFTTHVGQYI RSNPDGPIVS LEFFCSREVY KRKNIESCNA MLRIESKDSE  120
NWVVTKFVED HNHSLVGPSK VHFLRPRRHF AGAAAKKAPA LTEVADNNQN DIMVSVDGNH  180
VFVDPNENAP SMPLHFIQPC SRRRTLGRDA HNLLTYFKKM QSENPGFYYA IQLDEENRLS  240
NVFWADARSR TAYNHFGDAV VFDTMYRPNQ FQVPFAPFTG VNNHGQMVLF GCALLLDESE  300
SSFAWVFETW LSAMNNRRPV SITTDQDRAI KAAVNRVFPQ TRHCICKWHI LREGQERLAH  360
VYLSHPSFHG ELYSCINFSE TIEDFESAWS LILDRYDIGK NEWLHAVYNA RKQWAPVYFR  420
DTFFAALSSN HGVSSFFEGY VNQQTTIPMF FKQYERALEN SLEREIEADY YTNCTSPVLK  480
TPSPMEQQAA NLYTKKVFEK FQEELVETFV HTANKIDGDG SVSKFRVAKY EQDHKAYIVM  540
LDVSEMNASC SCQMFEYSGV LCRHILTVFT VTNVLTVPSH YILKRWTKNA RSASLVDEQY  600
TGVQCMESLS VRFNSLCREA LKFAEEGAVC TDTYSAAMEA LKDGEKKIAQ VKRSVGKNKQ  660
DNGSKKPSTP TPDKIPSLWP WQDSVPSRFN LNDSGAHIAD LSQPTMAPIA INRDGTLADN  720
TVVLTCFKSM TWILENKNPT SKVALINLKL QDYGRATSGE TEVQFRLTRA TLEPMLKSMA  780
YISQQLSTPA NKVAVINLKL HDASTTGETE VKFQVSKETL GSMLRSMAYI REQL*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01873.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830662.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A022RT310.0A0A022RT31_ERYGU; Uncharacterized protein
STRINGMigut.N01873.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]