PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01113.1.p
Common NameMIMGU_mgv1a013585mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 217aa    MW: 24257.2 Da    PI: 9.9164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01113.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.8e-124087355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      + h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A +Y+k+Lq
  Migut.N01113.1.p 40 QEHVLAERKRREKLSQRFIALSALVPAL-----KKMDKATVLGDAAKYMKQLQ 87
                      67999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4533786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-164099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-104087IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-174199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.95E-114291No hitNo description
SMARTSM003536.2E-144392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEISSLAESS SSSSGILDDS LFQQWPVNPK RITTSNSQAQ EHVLAERKRR EKLSQRFIAL  60
SALVPALKKM DKATVLGDAA KYMKQLQDKV KILEEQSKKT SIPSVNESLV FVKKHEQNSS  120
SSSSDESFPE IKARLCNKEV LITIHCVKRK GVVEKAVSMI EKLHLSAINT SVMSFGDSAL  180
SITVHAQVII LINFFFHTNH IINFYLFFIF LFLLLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-134290957Transcription factor MYC2
5gnj_B1e-134290957Transcription factor MYC2
5gnj_E1e-134290957Transcription factor MYC2
5gnj_F1e-134290957Transcription factor MYC2
5gnj_G1e-134290957Transcription factor MYC2
5gnj_I1e-134290957Transcription factor MYC2
5gnj_M1e-134290957Transcription factor MYC2
5gnj_N1e-134290957Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14550ERKRRE
24651RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N01113.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835374.11e-132PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0721e-40BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A022RGG01e-154A0A022RGG0_ERYGU; Uncharacterized protein
STRINGMigut.N01113.1.p1e-155(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-40bHLH family protein