PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00491.1.p
Common NameMIMGU_mgv1a024989mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 81aa    MW: 9409.37 Da    PI: 8.9781
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00491.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12.1e-08855348
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                       WT+   + + da + + ++    W   ar +g g+t +++k +++++l
  Migut.N00491.1.p  8 EWTEKQNKHFEDALATYNKDspeWWQNLARAVG-GKTVEEVKRHYRSLL 55
                      7********************************.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.001459IPR017884SANT domain
SMARTSM007170.0011557IPR001005SANT/Myb domain
CDDcd001676.71E-5855No hitNo description
Gene3DG3DSA:1.10.10.607.4E-5861IPR009057Homeodomain-like
PfamPF002491.3E-5855IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-11862IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MSSNTNSEWT EKQNKHFEDA LATYNKDSPE WWQNLARAVG GKTVEEVKRH YRSLLRDIDQ  60
IENGKVPVPN YRDTTNGRRM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-249771178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00491.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843030.11e-54PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB85e-29RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A022R1S27e-51A0A022R1S2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-31RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]