PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00487.1.p
Common NameLOC105963375, MIMGU_mgv1a016932mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 101aa    MW: 11505.8 Da    PI: 9.8927
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00487.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.9e-091659344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT+   +++ +a++++  +   +W+ Iar +  g+++++++ ++
  Migut.N00487.1.p 16 SWTAKQNKQFEEAIAMFDRDtpdRWHNIARQVS-GKSAEEVRRHY 59
                      7*****************99*************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.0311267IPR017884SANT domain
SMARTSM007175.7E-81365IPR001005SANT/Myb domain
SuperFamilySSF466892.18E-121570IPR009057Homeodomain-like
PfamPF002491.1E-61659IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-51668IPR009057Homeodomain-like
CDDcd001675.70E-61762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MASSSMSSSS RNSASSWTAK QNKQFEEAIA MFDRDTPDRW HNIARQVSGK SAEEVRRHYE  60
ALEKDIMKIE TDQVPIPNYK SISNARGYSN DHRLMKNLKL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-298100292RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00487.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843222.13e-69PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A022R1R66e-68A0A022R1R6_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-33RAD-like 6