PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M01116.1.p
Common NameLOC105969192, MIMGU_mgv1a016121mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 134aa    MW: 14585.1 Da    PI: 10.5257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M01116.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-201969155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++++GVr ++ +gr++AeIrdp   gk+ r++lg+f+tae+Aa+a+++a+++++g
  Migut.M01116.1.p 19 THFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEDAARAYDNAARRFRG 69
                      589*******.**********8...557************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.74E-311977No hitNo description
PfamPF008471.7E-131969IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-222077IPR016177DNA-binding domain
SMARTSM003802.6E-392083IPR001471AP2/ERF domain
PROSITE profilePS5103223.5382077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-332077IPR001471AP2/ERF domain
PRINTSPR003673.9E-112132IPR001471AP2/ERF domain
PRINTSPR003673.9E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAPRPRAAAA AAETGQHETH FRGVRKRPWG RYAAEIRDPG KKSRVWLGTF DTAEDAARAY  60
DNAARRFRGS KAKTNFPPPD TDINKPNCFF TNIHSPSQSS TVESSSRETF PPSPPPAAVL  120
DSTSWTSLSA PDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-242077260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-242077563ATERF1
3gcc_A6e-242077563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M01116.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849393.11e-92PREDICTED: ethylene-responsive transcription factor 4
SwissprotQ9FE674e-35ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A022QJ913e-91A0A022QJ91_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-25erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]