PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L01657.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family AP2
Protein Properties Length: 302aa    MW: 33165.6 Da    PI: 6.6281
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L01657.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.61.5e-1373122154
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k  
  Migut.L01657.1.p  73 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCS 122
                       89********.7******5553..2.26**********99**********9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.5E-9144IPR001471AP2/ERF domain
PROSITE profilePS5103211.864138IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-9339IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-11339IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-1773133IPR016177DNA-binding domain
CDDcd000181.70E-2573133No hitNo description
PfamPF008474.5E-973122IPR001471AP2/ERF domain
SMARTSM003802.5E-3174137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-1674132IPR001471AP2/ERF domain
PROSITE profilePS5103215.23774131IPR001471AP2/ERF domain
PRINTSPR003673.2E-67586IPR001471AP2/ERF domain
PRINTSPR003673.2E-6113133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LDADINFNAS DYDDDLQQMK SLGKEEFVHI  60
LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEIEA ARAYDKAAIK  120
CSGREAVTNF DASTYEEELS TEADIGAPAG DYHDLDLNLG IAPPNRANGQ TQNIEMGSFQ  180
IYRGSNNLPE NGPKGSASAS MEHLSHGHRN VYEAPPSFHP IYKGTAEKIM EVDSPANWGW  240
KTHDNFHVNH PLPLLSTAAS SGFATTSSSG AIHQSPFNTI SQTHYPIPLS NYNNGSHYWF  300
G*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L01657.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7844551e-127KJ784455.1 Salvia miltiorrhiza AP4/EREBP Transcription Factors (WRI4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835987.10.0PREDICTED: floral homeotic protein APETALA 2-like
SwissprotB8AXC32e-84AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A022RHZ70.0A0A022RHZ7_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-80AP2 family protein