PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L01462.1.p
Common NameMIMGU_mgv1a019162mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family YABBY
Protein Properties Length: 214aa    MW: 23705.7 Da    PI: 5.0729
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L01462.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY182.22.8e-5691803166
             YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekees 91 
                       v+   eqvCyvqC+fC+t+l+vsvP +sl +vvtvrCGhCts+lsvn+ ka     +l +  ++ +++l  + + e  +ee + + ++ + ++
  Migut.L01462.1.p   9 VDIGQEQVCYVQCGFCSTVLLVSVPCSSLTMVVTVRCGHCTSILSVNMVKACfvplHLFTPINNQQQELMVQPKWEVCSEEVAANDKKLAANN 101
                       556689*****************************************9998766665555555444444444334444444444444444444 PP

             YABBY  92 astsvssekl...senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
                       ++t  +s  +   ++++++++ ++   + +PPek+qr+Psayn fikeei+r+k + P+++h++af aaaknWah P+ 
  Migut.L01462.1.p 102 NNTCSPSLCFssdEDDDEDSINHINGvIHKPPEKKQRAPSAYNHFIKEEIKRLKIEYPNMTHKQAFGAAAKNWAHCPQS 180
                       444444444443233444456666665679***********************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.3E-5513179IPR006780YABBY protein
SuperFamilySSF470955.24E-8125180IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.3E-5131180IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSSELDNSVD IGQEQVCYVQ CGFCSTVLLV SVPCSSLTMV VTVRCGHCTS ILSVNMVKAC  60
FVPLHLFTPI NNQQQELMVQ PKWEVCSEEV AANDKKLAAN NNNTCSPSLC FSSDEDDDED  120
SINHINGVIH KPPEKKQRAP SAYNHFIKEE IKRLKIEYPN MTHKQAFGAA AKNWAHCPQS  180
VNKGGEVLHS CNERDNDKMA INYSDDVDNE VIN*
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L01462.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848044.11e-156PREDICTED: axial regulator YABBY 4
SwissprotQ9LDT31e-54YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A022QKJ11e-155A0A022QKJ1_ERYGU; Uncharacterized protein
STRINGMigut.L01462.1.p1e-158(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.15e-48YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]