PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L01294.1.p
Common NameMIMGU_mgv1a025639mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ZF-HD
Protein Properties Length: 239aa    MW: 26195.2 Da    PI: 8.6343
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L01294.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer68.11.5e-214501658
       ZF-HD_dimer 16 slGghavDGCgEfmpsegeegt....aaalkCaACgCHRnFHRreve 58
                      +lGghavDGC+E+mp++++++t    ++ lkCaACgCHRnFHRr+++
  Migut.L01294.1.p  4 ALGGHAVDGCCEYMPHTTSSATsitdPTLLKCAACGCHRNFHRRQPD 50
                      58*************97766333555899***************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152317.244148IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-12457IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.5E-17448IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.5E-17549IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.71E-18117187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-27118191IPR009057Homeodomain-like
PROSITE profilePS500718.6128192IPR001356Homeobox domain
TIGRFAMsTIGR015657.4E-22130186IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MQPALGGHAV DGCCEYMPHT TSSATSITDP TLLKCAACGC HRNFHRRQPD FSTAAAAVIA  60
PPFLDFRLPA AAQPHPKRIS HSTSPESPHA APPPHHKLQL ALSTAVVVAA DEHHHHQEPV  120
TPTAENPSGR KRSRTKFSRE QKEKLHSFSE KLGWKIQKSD EAAAEEFCRE AGVAKSVLRV  180
WMHNHRNVSG KKDRDIIIIN NNGGKLINSS SENNNNGGNS SSENEEIRNI NKWQSFSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-201311871874ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L01294.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847537.11e-174PREDICTED: LOW QUALITY PROTEIN: zinc-finger homeodomain protein 10-like
TrEMBLA0A022QN791e-174A0A022QN79_ERYGU; Uncharacterized protein
STRINGMigut.L01294.1.p1e-177(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.16e-40zinc finger homeodomain 1