PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00605.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family FAR1
Protein Properties Length: 484aa    MW: 56063.8 Da    PI: 9.5498
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00605.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.48.9e-2712102290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +Y++YA++vGF +++++++ s+ +++ +  ++ Cs+eg++++++++ t++++rt++et++gCka+++v++++  gkw+vtk+  +HnHel 
  Migut.L00605.1.p  12 CYKAYARRVGFGTKVNHTRLSQSDKSLIGVDYACSREGQSKQKDQEkTKQSKRTQSETKIGCKAMMRVSLNQdIGKWVVTKFIIDHNHELY 102
                       7*************************************999887775888999*******************99***************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-2512102IPR004330FAR1 DNA binding domain
PfamPF105514.4E-35159253IPR018289MULE transposase domain
PROSITE profilePS5096611.375440476IPR007527Zinc finger, SWIM-type
PfamPF044343.7E-7440473IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-4451478IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MVFDSALDAK TCYKAYARRV GFGTKVNHTR LSQSDKSLIG VDYACSREGQ SKQKDQEKTK  60
QSKRTQSETK IGCKAMMRVS LNQDIGKWVV TKFIIDHNHE LYTPRTTSLL RGHRKITTAQ  120
KNIINVLNEA GIPATKIMSV LSHGSDIRSR LAYRYFGDVV TFDATYLTDR YGMPFVPFTG  180
VNHHHQSIMF GCALLVNETI SSYVWLLRTW LEAMSGRAPS VIITDEDKSM RAAITEVLPN  240
TTHRLCMWHI LQKVPEYLAH IFNKYPSFQG EFRHCIHETI TIQEFEHEWV ELIKKYELQE  300
NDWLTKLYGQ RERWIPAYLR GIFCAGMSTT QRSESMNNFF KGFVRSSTLV SDFVHQYEKA  360
LNSRYIKEKE KDLKTKNTKP ALKTCYKIEA EAAEIYTRKL FLMFREELFS SQKYMSSKHY  420
LDGFKKCYHV MPIGEKKPTY EVVIDISEKN AICSCHMFEF VGILCRHILA IFVKKSLTNS  480
LPH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00605.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848293.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A022QK370.0A0A022QK37_ERYGU; Uncharacterized protein
STRINGMigut.L00605.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-114FAR1-related sequence 5