PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00443.1.p
Common NameLOC105960644, MIMGU_mgv1a014582mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family YABBY
Protein Properties Length: 186aa    MW: 21055 Da    PI: 9.321
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00443.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY208.32.8e-6421577170
             YABBY   7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                       +eq+Cy+ CnfC+ +lavsvP +slf vvtvrCGhCt+l svn+a + +     +hl +        +  + +++ + +v    s+s+ ++++
  Migut.K00443.1.p   2 AEQLCYIPCNFCSIVLAVSVPCNSLFDVVTVRCGHCTNLWSVNMASTFHPFWPDHHLLH--------QAPNYNSSSEYKVDLGGSSSKLNNKM 86 
                       69***************************************999988887776666433........33333333333344444444444555 PP

             YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       +++ +   ++p++  v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl
  Migut.K00443.1.p  87 SIQPSIPTKLPEQRTVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 157
                       566777888999999******************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046908.7E-702157IPR006780YABBY protein
SuperFamilySSF470951.03E-7101150IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.8E-4104151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAEQLCYIPC NFCSIVLAVS VPCNSLFDVV TVRCGHCTNL WSVNMASTFH PFWPDHHLLH  60
QAPNYNSSSE YKVDLGGSSS KLNNKMSIQP SIPTKLPEQR TVNRPPEKRQ RVPSAYNQFI  120
KEEIQRIKAN NPEISHREAF STAAKNWAHF PHIHFGLMLE TTNQTAKLNE GSEKHKMRRA  180
AIVNK*
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00443.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4513972e-40AY451397.1 Antirrhinum majus YABBY-like transcription factor PROLONGATA (PROL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840285.11e-138PREDICTED: axial regulator YABBY 5
SwissprotQ8GW462e-75YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A022R5T51e-137A0A022R5T5_ERYGU; Uncharacterized protein
STRINGMigut.K00443.1.p1e-138(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-77YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]