PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J01747.1.p
Common NameLOC105949340, MIMGU_mgv1a012745mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HSF
Protein Properties Length: 242aa    MW: 27675.3 Da    PI: 7.9261
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J01747.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.2e-35251162102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y ++ed++++e+isw+e g++fvv+++ ef++++Lp+ Fkhsnf+SFvRQLn+YgF+k+ +++         weF+++ F+kg++++l
  Migut.J01747.1.p  25 FLMKTYMLVEDPATDEVISWNEGGTAFVVWQPAEFSRDLLPTLFKHSNFSSFVRQLNTYGFRKIATNR---------WEFSNDMFRKGERDQL 108
                       9****************************************************************998.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  Migut.J01747.1.p 109 CEIRRRKA 116
                       *****985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.7E-5221114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.03E-3321114IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.9E-3622114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MESDQSEKGL LVEEYVRKGL PPPPFLMKTY MLVEDPATDE VISWNEGGTA FVVWQPAEFS  60
RDLLPTLFKH SNFSSFVRQL NTYGFRKIAT NRWEFSNDMF RKGERDQLCE IRRRKAWSNK  120
SQPKVQVHQA SPPPPPPKDQ SSENEDQRSS STSSSSEFTT LIDENKKLKQ ENGILNSELA  180
IMKKKCKELL DLVAIYGGKC GKKEEQKEEE NNEGPKLFGV RLEVEGEIEK KRKRVEIRGG  240
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B3e-21251144104Putative transcription factor
5d5x_B3e-21251144104Putative transcription factor
5d5x_E3e-21251144104Putative transcription factor
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828086.11e-179PREDICTED: heat stress transcription factor B-3
SwissprotO222306e-78HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A022PWU91e-179A0A022PWU9_ERYGU; Uncharacterized protein
STRINGVIT_08s0007g08750.t011e-101(Vitis vinifera)
STRINGPOPTR_0016s05680.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.16e-68heat shock transcription factor B3