PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I01075.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 546aa    MW: 60797.9 Da    PI: 6.1678
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I01075.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS241.92.7e-741555342374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkf 93 
                       ++lL  cA a+++++ +++q++L  l++las +gd+++Rla++ ++AL ++l++ s+ + ++  ++++ + +n +    +l  f+++ P++++
  Migut.I01075.1.p 155 EQLLSPCAAAITARNPSRVQHFLYVLHDLASLNGDANHRLAFHGLRALTHHLSSsSGGSGFS--TSNTFAASNPKFFRDSLIRFNDINPWFRI 245
                       68999************************************************932223333..3333333445555555556********** PP

              GRAS  94 shltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeel 172
                        + +aN+ Il+ ++++    +++Hi+D+++s+GlQWp+Ll++L+ R+ ++pp +R+T+v++p+ +         +  +     ++L  +A+ +
  Migut.I01075.1.p 246 PNNVANSSILQILAEQkhptNTLHILDIGVSHGLQWPTLLEELTRRTgGPPPLVRLTTVDPPTGNrnstaapfaHGPQDYDFSSKLLGYAKDI 338
                       ************99987888899************************55666*********987788889999888888999*********** PP

              GRAS 173 gvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerfleal 261
                       +++++++ +   +l++l++++++ ++ +E+l+++ +++lh+l    ++ ++er+e+Lkl+++l+Pk ++++e++ad+   n ++F+++f++ +
  Migut.I01075.1.p 339 NINLQIDRIENFHLQNLNPQTIKSSSeEETLIICAQFRLHNLN---HTNPDERTEFLKLLRGLNPKGLILSENNADCscnNCGDFATGFSRRV 428
                       ********7666**********9888799*************8...77777789*******************9766446778********** PP

              GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrvee 353
                       e  + +fds++  +    + r + Er++++ e+ +++   g++     e++ekW+er+++aGF+   ++e++++ ak+llrk++ +++ rv+e
  Migut.I01075.1.p 429 ENLWRFFDSTSIAY----KGRESEERKMMEAEAAKMLVSVGEM----SEKKEKWSERMKSAGFRREIFGEETVDGAKALLRKYDsNWEIRVDE 513
                       **********7664....5555555555666688888888887....79999********************************9999***** PP

              GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                       ++g++ l Wk++++ ++S W+
  Migut.I01075.1.p 514 KDGCVGLFWKGETVSFCSLWK 534
                       ********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.008128513IPR005202Transcription factor GRAS
PfamPF035149.4E-72155534IPR005202Transcription factor GRAS
Gene3DG3DSA:3.40.50.1503.0E-4254485IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MTMEEPEPNT PSDHILGWIG ESISYFPTFF DDPYDTGDFS GDSWWVQPQD LDQELIGSSS  60
NSFNAAMPTT TAAAPTPTES IVSDQSSIPL DSTKKRKLLD NSSPKVSRKN TNRLEDSTAG  120
VAEPPARRPV ANRRVNNRSA GNSSNGNNKE GRWAEQLLSP CAAAITARNP SRVQHFLYVL  180
HDLASLNGDA NHRLAFHGLR ALTHHLSSSS GGSGFSTSNT FAASNPKFFR DSLIRFNDIN  240
PWFRIPNNVA NSSILQILAE QKHPTNTLHI LDIGVSHGLQ WPTLLEELTR RTGGPPPLVR  300
LTTVDPPTGN RNSTAAPFAH GPQDYDFSSK LLGYAKDINI NLQIDRIENF HLQNLNPQTI  360
KSSSEEETLI ICAQFRLHNL NHTNPDERTE FLKLLRGLNP KGLILSENNA DCSCNNCGDF  420
ATGFSRRVEN LWRFFDSTSI AYKGRESEER KMMEAEAAKM LVSVGEMSEK KEKWSERMKS  480
AGFRREIFGE ETVDGAKALL RKYDSNWEIR VDEKDGCVGL FWKGETVSFC SLWKVIDFGV  540
EDCLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-3015153484473Protein SHORT-ROOT
5b3h_B8e-3115153430419Protein SHORT-ROOT
5b3h_E8e-3115153430419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I01075.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856585.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2G9HXR40.0A0A2G9HXR4_9LAMI; Uncharacterized protein
STRINGMigut.I01075.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49492139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-144GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]