PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H02460.1.p
Common NameLOC105964992, MIMGU_mgv1a008130mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 385aa    MW: 41749.8 Da    PI: 6.4287
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H02460.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.1e-20187236255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a+++a+++++g
  Migut.H02460.1.p 187 RYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEAAAAAYDEAALRFRG 236
                       7********.**********76....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.50E-21187246No hitNo description
Gene3DG3DSA:3.30.730.106.8E-32187245IPR001471AP2/ERF domain
PROSITE profilePS5103225.106187244IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-22187245IPR016177DNA-binding domain
PfamPF008473.9E-13187236IPR001471AP2/ERF domain
SMARTSM003805.6E-36187250IPR001471AP2/ERF domain
PRINTSPR003672.7E-11188199IPR001471AP2/ERF domain
PRINTSPR003672.7E-11210226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MCVFNKVANP RDEFYPKKRG EIINNVNSEL FDHGGGRENR VLDSLVSPMF SGFNREQEMS  60
AMVSALAHVV AGDEGGAAAA AAVGGSSSSS SACKRRRDEE PNTQYYSEKS VARVCRPPPP  120
PYADSSIGSS NFRQEGGGST SMVRTSIITS TEASAVYTYT PTLYHHPQQN SINNNESPPA  180
SRINTRRYRG VRQRPWGKWA AEIRDPYKAA RVWLGTFDTA EAAAAAYDEA ALRFRGNKAK  240
LNFPENVKLL HHPHPPSEAA AGPVVRGGGD GGDDRFQWLR SDFERQLYNV GYDYNNSNNG  300
SLSSSEMMTP PSSSGVVMTL DDIQRQDGLI STMQYPPPET SYPLYYPAAQ PPEIDFRPEG  360
SHSSGGGGGG DFSWTDSGHQ TSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22188247666ATERF1
3gcc_A4e-22188247666ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H02460.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844951.10.0PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLA0A022QUZ20.0A0A022QUZ2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-29ethylene response factor 110