PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01517.1.p
Common NameLOC105951614, MIMGU_mgv1a020333mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HSF
Protein Properties Length: 293aa    MW: 33201.3 Da    PI: 5.4548
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01517.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.51.8e-32311241102
                       HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
      HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                       aFl+k+++i++d++++++isws +g+sf+++++++f+ ++Lp yFkhsn+aSFv QLn YgF+k+   ++        we+++++F++gk +l
  Migut.H01517.1.p  31 AFLTKTFNIVNDPNTDSVISWSLSGDSFIIWNHHKFSAEILPVYFKHSNLASFVYQLNSYGFRKIGVIHQ--------WEYENPNFQAGKGNL 115
                       69****************************************************************9994........*************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  94 lekikrkks 102
                       l++i+r+k+
  Migut.H01517.1.p 116 LSNIRRRKR 124
                       ******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.09E-2928122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-4828122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-3129122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-2832122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-173255IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-177082IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-178395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MNCSTCSGGV GGGTTNSVAG SEERRYLGPP AFLTKTFNIV NDPNTDSVIS WSLSGDSFII  60
WNHHKFSAEI LPVYFKHSNL ASFVYQLNSY GFRKIGVIHQ WEYENPNFQA GKGNLLSNIR  120
RRKRNVCSGT YITISPEIVM NEINESKLEI EKLEHEITAV QEKVENIYKH KLLKKQTRGE  180
VFARKTMIEE IGKEIHARKK RKFISLTTEN TEKNHGSENQ PVLSTDEYSE VVIDATLEEG  240
SMAKNADDYT FWTKILLEDY EACEAENIVM DFESSIAKVD NQEGERVIID LN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-273012618124Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01517.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830517.10.0PREDICTED: heat stress transcription factor A-7a-like
TrEMBLA0A022RWS00.0A0A022RWS0_ERYGU; Uncharacterized protein
STRINGMigut.H01517.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1687534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-36heat shock transcription factor A2