PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.G00383.1.p
Common NameMIMGU_mgv1a018789mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HSF
Protein Properties Length: 309aa    MW: 35924.6 Da    PI: 5.4947
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.G00383.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.11e-36161082103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       F++k+yei++d++++e++sws+ +nsf+++d+++f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll
  Migut.G00383.1.p  16 FMSKTYEIVDDPNTDEIVSWSRGNNSFIIWDPHSFTLNLLPRYFKHNNFSSFVRQLNTYGFRKVDPNK---------WEFANEGFLRGQRHLL 99 
                       9***************************************************************9988.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++ikr+k++
  Migut.G00383.1.p 100 KNIKRRKNT 108
                       ******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-3512105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-3812105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5912105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-201639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.4E-3216105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-205466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MPQPMEGLHV AGPTPFMSKT YEIVDDPNTD EIVSWSRGNN SFIIWDPHSF TLNLLPRYFK  60
HNNFSSFVRQ LNTYGFRKVD PNKWEFANEG FLRGQRHLLK NIKRRKNTTS SNFQTTLESC  120
VEIGRFGLDG EIDRLRRDKS VLMAELVKLR QQQQIANSYL EEIEQRLRET ELKQRQTMGF  180
LIKAIKNPTF LQQIVHHKEK IKAKKRIKRI DQELGQQLGV GNNNVGNIIG DFEDGNVSDV  240
KLEPEEFDVE FERLAMSMQE PSINNSEEER LVVNEDDFDK RIIDETLFDG GFWGDMINHD  300
EIGTINLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-261011011125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198104LKNIKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012832339.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-104HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A022RNV90.0A0A022RNV9_ERYGU; Uncharacterized protein
STRINGPOPTR_0010s09210.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.17e-95heat shock transcription factor A6B