PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F02018.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family AP2
Protein Properties Length: 489aa    MW: 52793 Da    PI: 7.8703
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F02018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.2e-17174223155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Migut.F02018.1.p 174 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 223
                       78*******************......55************************997 PP

2AP238.72.5e-12266316155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+ +lg f+ + eAa+a+++a+ k +g
  Migut.F02018.1.p 266 SKYRGVTLHK-CGRWEARMGQF--L-GKKYMYLGLFDNEVEAARAYDKAAIKCNG 316
                       89********.7******5553..2.26**********99**********98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-15174231IPR016177DNA-binding domain
PfamPF008475.6E-9174223IPR001471AP2/ERF domain
SMARTSM003805.4E-32175237IPR001471AP2/ERF domain
CDDcd000181.25E-11175233No hitNo description
PROSITE profilePS5103217.622175231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-16175231IPR001471AP2/ERF domain
PfamPF008471.4E-7266316IPR001471AP2/ERF domain
CDDcd000188.12E-25266326No hitNo description
SuperFamilySSF541712.88E-16266325IPR016177DNA-binding domain
SMARTSM003807.4E-31267330IPR001471AP2/ERF domain
PROSITE profilePS5103214.974267324IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-15267324IPR001471AP2/ERF domain
PRINTSPR003673.4E-6268279IPR001471AP2/ERF domain
PRINTSPR003673.4E-6306326IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MLDLNVDAVL SVDSTSCGGG AGRGNTAATA DSVASTTTST TNNAAFPSSA GADEVDCNSS  60
TRVRHSVSTL NFSILDKSVI EIEDEVDNDV INCRSELQLF PMGVSSSPPQ SLSMSPSLVR  120
AKYWLNLSVP EVPGGGGGGL ELGIYKAAQL PAATNQAPQP QVKKSRRGPR SRSSQYRGVT  180
FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF TIADYDEDMS  240
QMKNLTKEEF VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK YMYLGLFDNE  300
VEAARAYDKA AIKCNGSEAV TNFEPSNYDR EMNMSSGIGS NLDLNLGISL STDGQQGYET  360
TRNLHFPHVS NELPDGKRIK IETASASPHE LLMSTKGAPP MWPIVYSGFA PNSKERATVM  420
SGEAVPLPGY ANWPWKMPSH GVGVVTPMPF ISASAASSGF SSNNASPYLN SLVSRTPQFP  480
ASAFNTLH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F02018.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834705.10.0PREDICTED: floral homeotic protein APETALA 2 isoform X1
SwissprotB8AXC31e-104AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A022RHV30.0A0A022RHV3_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-102related to AP2.7