PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F01790.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family AP2
Protein Properties Length: 437aa    MW: 47717.5 Da    PI: 6.6415
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F01790.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-17158207155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Migut.F01790.1.p 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTADAAARAYDRAAVKFRG 207
                       78*******************......55**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.96E-11158217No hitNo description
PfamPF008471.1E-8158207IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-16158216IPR016177DNA-binding domain
PROSITE profilePS5103217.859159215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-17159215IPR001471AP2/ERF domain
SMARTSM003802.4E-30159221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MLDLNIDAGF SAEEKTDRKE EAENTADADS FTSTTTTTTS ATKNGADELD SDSRAPGDFV  60
STLNFSILGE DVVEIDRDVV NDNTRSELQL FPVGDLYSSP VADKARYWLN LSAATEVSAA  120
GGVELGVLTA VQLPSPNNQV QPPAAAKKGR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGGFDT ADAAARAYDR AAVKFRGVDA DINFNINDYV EDMKQIKNLT KEEFVQTLRR  240
QSSGFARGNS KYRGVTVHKY GQWEAQMGQI LQHKVYDKAT IMNNPRQPFA NVMPSNYKTE  300
ITTTSTDGGS SGNLDLSLGI SFSSDNPLTN YTTKNLHSPY ASNESPDAKR IKVIQPSSSH  360
GLRMTAMCAS MGEATYSAFS PNNKERAVPH FSYNATSSRF SSTTTTTTTT TSPYANSLTS  420
STSTPQFADT SLHRLL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F01790.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834898.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotB8AMA92e-70AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB52e-70AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A022RHX10.0A0A022RHX1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.23e-66related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]