PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00357.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HSF
Protein Properties Length: 347aa    MW: 38272.8 Da    PI: 5.1719
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00357.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.67.3e-37271172101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d +++++isw+e+g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F+k++k+ll
  Migut.F00357.1.p  27 FLTKTYQLVDDTAIDDIISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVMPDR---------WEFSNECFRKDEKKLL 110
                       9*****************************************************************99.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r+k
  Migut.F00357.1.p 111 CEIQRRK 117
                       *****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3817111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5623116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.08E-3524116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3227116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1708.4E-4175200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTPPPVDRTG GGESTAADMP RSLPTPFLTK TYQLVDDTAI DDIISWNEDG STFIVWNPTE  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKV MPDRWEFSNE CFRKDEKKLL CEIQRRKIAT  120
PPPTAAATLC AAVSEHLTPA APQRTVSPSD SGEEQVLSSS NSPGTVREFS GSTAELIGEN  180
ERLRKQNVQL SKELDQMKSL CNNIYALMSN FAGTNKHNSS SNSNDRPGLS CKQYMAENGV  240
KPLDLLPMTR FCEEIQTAVV AAAAHGGEAC NIRSAAEEIG ARLFGVPIGL KRGREGEGSS  300
ADHEMELQLQ QPGLDIKPEP MDEDNSGDDL AEASWLRRSN SRNRRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-231611619129Heat shock factor protein 1
5d5v_B1e-231611619129Heat shock factor protein 1
5d5v_D1e-231611619129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852099.10.0PREDICTED: heat stress transcription factor B-2a
TrEMBLA0A068VLL81e-135A0A068VLL8_COFCA; Uncharacterized protein
STRINGSolyc03g026020.2.11e-111(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.18e-90heat shock transcription factor B2A