PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00088.1.p
Common NameLOC105964256, MIMGU_mgv1a027027mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HSF
Protein Properties Length: 462aa    MW: 51029.6 Da    PI: 5.0896
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00088.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.8e-36241162103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++ ++sws+ +nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  Migut.F00088.1.p  24 FLSKTYDMVDDPATDAVVSWSKGNNSFVVWNVPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDH---------WEFANEGFLRGHKHLL 107
                       9*****************************************************************99.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+k +
  Migut.F00088.1.p 108 KNINRRKPS 116
                       ******975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.17E-3519113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6120113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.3E-3920113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.4E-202447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-206274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEAGVGGGGG GGIVSAAAAS PPPFLSKTYD MVDDPATDAV VSWSKGNNSF VVWNVPEFSR  60
DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD HWEFANEGFL RGHKHLLKNI NRRKPSHAQI  120
QQQQQPAKTQ NSSVGSCIEV GSSGIDGEVE SLKRDKNNLM QELVRLRQQQ QSTDNQLQTV  180
GQRVHVMEQR QQQMMSFLAK AMQSPGFMSQ LVHQQNDSNR QISGGNKKRR LPNQDEENIS  240
RKYSITSPDG QIIQYKPLMN EAAKSMLRQI LNMNTSSRSD SKLSNTSGFL IDQLHPPSDV  300
LDTGSSSNRM SGLTLSEVLP NSAAISEIQS SSGLAVHGNS HDTLFPEVNS GLTDFVLPHG  360
IAPENNMDLC DGTFKGAESI GLDEPLRDYD IDILLDDIQK LPSINDVFWE QFLSSTDDNT  420
DKINGSSEDE QKEQESEWDK LKNLNSLTEH MGLLASASES G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-2811133129Heat shock factor protein 1
5d5v_B6e-2811133129Heat shock factor protein 1
5d5v_D6e-2811133129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844238.10.0PREDICTED: heat stress transcription factor A-1
SwissprotQ84T611e-156HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A022RZ990.0A0A022RZ99_ERYGU; Uncharacterized protein
STRINGSolyc03g097120.2.11e-166(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-129heat shock factor 3