PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E01778.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HSF
Protein Properties Length: 351aa    MW: 39848.8 Da    PI: 4.5312
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E01778.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35461372102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k++e++ed++++++isws+ +nsfvv+d+ +f++ +Lp+yFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k+ll
  Migut.E01778.1.p  46 FLTKTFEMVEDPSTDSVISWSRAKNSFVVWDSYKFSTALLPRYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLL 129
                       9********************999*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++ikr+++
  Migut.E01778.1.p 130 KTIKRRRN 137
                       *****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-3442135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.9E-6042135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.5E-3842135IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.5E-194669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3146135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEGVKLEVVE DDCIIITATA AASPSSSSSS SPHPMEGLHE VGPPPFLTKT FEMVEDPSTD  60
SVISWSRAKN SFVVWDSYKF STALLPRYFK HSNFSSFIRQ LNTYGFRKVD PDRWEFANEG  120
FLGGQKHLLK TIKRRRNVAP SSTTPQCIGG GSTTITELIN EEEEIEKLKR DRDTLMAEIM  180
KLKQQQKSSK ERMTAMEERI QTTEKKQHQI MSFLAKAFRS PVFVQQYVQK KEEKHIEIGQ  240
KRRLTMSPSV ESDLQEMING DDINIESKVE SFLLPEEVPF SGDLNDAGLI NNNHIDNNIW  300
EDFLSDDFLV GGDEVEEAVL PDEVEVEELV ENTPEWGEDL RDLVHQLGFL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D3e-253713517129Heat shock factor protein 1
5d5v_B3e-253713517129Heat shock factor protein 1
5d5u_B3e-253713517129Heat shock factor protein 1
2ldu_A3e-254413518120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134LKTIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843410.10.0PREDICTED: heat shock factor protein HSF30
SwissprotP411521e-123HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A022R0J71e-180A0A022R0J7_ERYGU; Uncharacterized protein
STRINGVIT_04s0008g01110.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-96heat shock transcription factor A2