PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00326.1.p
Common NameMIMGU_mgv1a007817mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HSF
Protein Properties Length: 344aa    MW: 37929.3 Da    PI: 4.7925
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00326.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.93.8e-34181082101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       F++k+y++++d++++ li w + +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll
  Migut.E00326.1.p  18 FVMKTYQMVNDPATDGLIAWGKANNSFIVVEPLDFSQRILPVYFKHHNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQTQLL 101
                       9****************************************************************999.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i rkk
  Migut.E00326.1.p 102 CNIARKK 108
                       *****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.5E-5014107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.98E-3315107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-3516107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-171841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.1E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-175668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-176981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MRGGMEMNNG NGSMIAPFVM KTYQMVNDPA TDGLIAWGKA NNSFIVVEPL DFSQRILPVY  60
FKHHNFSSFV RQLNTYGFRK VDPDRWEFAN EWFLRGQTQL LCNIARKKLT GKSHTLNLRQ  120
LDGGGGGGDD EDEELITEIA RLKEEQKNLE QELESMNRRL EATERRPQQM MTFLYKVVED  180
PEMLPRMMLE KEMNIRSGGR LIASCVDSDK KKRKVIATKS ATDYSSSASS SIKTEDDLEP  240
RTNVGGESSS PISSPDGNFD VDAYNYRKSE PDWLGFRGSS GYADLDSPSF RGSGGEGGGF  300
VAVAPPVNGG ADGFDGNYFE GLIGGENAST QPPYPFSLLG GGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D2e-2611078129Heat shock factor protein 1
5d5v_B2e-2611078129Heat shock factor protein 1
5d5u_B2e-2611078129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214KKKRKV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846107.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV524e-88HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A022QMQ50.0A0A022QMQ5_ERYGU; Uncharacterized protein
STRINGSolyc12g007070.1.11e-100(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-76heat shock transcription factor C1