PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00040.1.p
Common NameLOC105952616, MIMGU_mgv1a014827mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family YABBY
Protein Properties Length: 178aa    MW: 19734.3 Da    PI: 9.574
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY174.47e-5481634163
             YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesast 94 
                       + sse++Cyv+CnfCntilav++P + ++++vtv+CGhC++l        s+  +  ++l+++l+ +     e+k+ +++++s  +++ +++t
  Migut.E00040.1.p   8 QYSSEHICYVRCNFCNTILAVEIPRKQMLETVTVKCGHCSNLSF-----LSTKPPPLHDLQTTLRLHglTSREHKKGQSATSSSSSSSINNNT 95 
                       679*************************************9744.....33444555556666655542344445555555555555555666 PP

             YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                       s   ++ls n++  ++ +p v++PPekr r Psayn f+keeiqrika+nP++ hreafsaaaknW+ +
  Migut.E00040.1.p  96 SSDETSLSLNTTTTTT-TPFVVKPPEKRHRLPSAYNIFMKEEIQRIKAANPEVPHREAFSAAAKNWSRY 163
                       6666677888877776.5779*********************************************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.8E-5510163IPR006780YABBY protein
SuperFamilySSF470952.09E-9107162IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.2E-5117162IPR009071High mobility group box domain
CDDcd013906.26E-6124162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MITMDLVQYS SEHICYVRCN FCNTILAVEI PRKQMLETVT VKCGHCSNLS FLSTKPPPLH  60
DLQTTLRLHG LTSREHKKGQ SATSSSSSSS INNNTSSDET SLSLNTTTTT TTPFVVKPPE  120
KRHRLPSAYN IFMKEEIQRI KAANPEVPHR EAFSAAAKNW SRYIPNTPQG PVSRSSN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E00040.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:15598802}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831636.11e-129PREDICTED: protein CRABS CLAW-like
RefseqXP_012831637.11e-129PREDICTED: protein CRABS CLAW-like
SwissprotQ8L9257e-57CRC_ARATH; Protein CRABS CLAW
TrEMBLA0A022RT631e-128A0A022RT63_ERYGU; Uncharacterized protein
STRINGMigut.E00040.1.p1e-129(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.14e-57YABBY family protein
Publications ? help Back to Top
  1. Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C
    The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development.
    Ann. Bot., 2014. 114(7): p. 1535-44
    [PMID:24989787]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]
  3. Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T
    Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation.
    Nat Commun, 2017. 8(1): p. 1125
    [PMID:29066759]
  4. Yamaguchi N, et al.
    Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy.
    Nat Commun, 2018. 9(1): p. 5290
    [PMID:30538233]