PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D02379.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family YABBY
Protein Properties Length: 161aa    MW: 17807.2 Da    PI: 10.394
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D02379.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY179.81.6e-55413823170
             YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppv 115
                        vsvP+ s+f++vtvrCGhC++llsvn+    q +  ++         ++++  v+e n ++   ++++ ++  +      ++d+e p+ pp 
  Migut.D02379.1.p   4 QVSVPYGSMFNIVTVRCGHCANLLSVNMGALLQSVQLQDF--------QKQQSLVAEANNNKDSGSSSKCNRFGP----LLHTDHEQPKLPP- 83 
                       69***********************999887776666553........222222222222222222222222222....3577888999999. PP

             YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       irPPekrqrvPsaynrfikeeiqrikasnP+i+hreafs+aaknWahfP+ihfgl
  Migut.D02379.1.p  84 IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEITHREAFSTAAKNWAHFPHIHFGL 138
                       9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.2E-594138IPR006780YABBY protein
SuperFamilySSF470955.24E-882131IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.106.6E-587130IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGVQVSVPYG SMFNIVTVRC GHCANLLSVN MGALLQSVQL QDFQKQQSLV AEANNNKDSG  60
SSSKCNRFGP LLHTDHEQPK LPPIRPPEKR QRVPSAYNRF IKEEIQRIKA SNPEITHREA  120
FSTAAKNWAH FPHIHFGLKL DGNKQAKVSG EAATKKSNSF *
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D02379.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851072.11e-118PREDICTED: putative axial regulator YABBY 2
SwissprotQ9XFB08e-64YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A022QHK01e-107A0A022QHK0_ERYGU; Uncharacterized protein
STRINGMigut.D02379.1.p1e-117(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-66YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]