PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D00917.1.p
Common NameLOC105953242, MIMGU_mgv1a009975mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 326aa    MW: 36088 Da    PI: 6
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D00917.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-19113161355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +g+W+AeIrdps+     r++lg+f taeeAa+a++  ++k++g
  Migut.D00917.1.p 113 YRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNTAEEAARAYDSEARKIRG 161
                       9*******.**********965...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.6E-40112175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-33112170IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-22112170IPR016177DNA-binding domain
PROSITE profilePS5103223.881112169IPR001471AP2/ERF domain
PRINTSPR003678.7E-12113124IPR001471AP2/ERF domain
PfamPF008471.4E-11113161IPR001471AP2/ERF domain
CDDcd000182.12E-34113171No hitNo description
PRINTSPR003678.7E-12135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MCGGAIISDV APPASSRRLT ADLLWGSAAA AAAADLNKKK NTGNYHSKPL IYQKKFHLYE  60
DFEADFQDFQ ESTVTKAFSF SASENPDFKG LKSVDSAESH EEKSTKRKRK NEYRGIRQRP  120
WGKWAAEIRD PSKGVRVWLG TFNTAEEAAR AYDSEARKIR GKKAKLNFPE DSPLSAPRHT  180
VKVNSRNDSI NPNLNQNTSF TNIHNNEYCF LKPLTPLSHD QGSNSFDCSD FGWGSTNCEK  240
TPEISSVLTS VVVEDVLSVS KRTKVGTEDL GGATFDGKLT DDLSEFDSQM KLFQMPYLES  300
NWDASIDAIL NGGNAVDLWS SDDVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22113169360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D00917.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012832386.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A022S3N90.0A0A022S3N9_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-54related to AP2 12