PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C00747.1.p
Common NameMIMGU_mgv1a024515mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 100aa    MW: 11377.7 Da    PI: 10.0318
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C00747.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.7e-101356344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WTt   +++ +a +++ ++   +W+ Iar +g g+++ +++ ++
  Migut.C00747.1.p 13 SWTTKQNKQFEEALAKYDKEtpdRWHNIARSVG-GKSADEVRRHY 56
                      7******************9*************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.951964IPR017884SANT domain
SMARTSM007173.3E-91062IPR001005SANT/Myb domain
SuperFamilySSF466898.58E-131267IPR009057Homeodomain-like
PfamPF002494.9E-81357IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-61366IPR009057Homeodomain-like
CDDcd001676.97E-62060No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MASSSMTSSR SSSWTTKQNK QFEEALAKYD KETPDRWHNI ARSVGGKSAD EVRRHYEALV  60
KDIMQIETDQ VPIPNYRAIA NTRGYSNEQR LMKNLKLQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-28698193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C00747.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.11e-56protein RADIALIS-like 3
SwissprotQ1A1731e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A022RYN93e-68A0A022RYN9_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-32RAD-like 6