PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00503.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 195aa    MW: 21916.5 Da    PI: 9.8219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00503.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.1e-121759855
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Migut.B00503.1.p 17 AERKRREKLTQRFIALSALVPGL-----KKMDKASVLGDAIKYLKQLQ 59
                      8**********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.237958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-161576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-141564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-161578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-91659IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-101663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MTTTATRVPS AQERMLAERK RREKLTQRFI ALSALVPGLK KMDKASVLGD AIKYLKQLQD  60
KVKILEEQQN NNKRKVESSA VFVKKHKLDH ALSDESIFGT TTIDDQSLII PEIETRLCNK  120
DVLIHIHCEK KKGVLEHPAI EVEKLNLSVV NTSVITFGDS ALYISLVAQM DEVSTLDMKE  180
LVKNLRRAIS KYSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1417621257Transcription factor MYC2
5gnj_B4e-1417621257Transcription factor MYC2
5gnj_E4e-1417621257Transcription factor MYC2
5gnj_F4e-1417621257Transcription factor MYC2
5gnj_G4e-1417621257Transcription factor MYC2
5gnj_I4e-1417621257Transcription factor MYC2
5gnj_M4e-1417621257Transcription factor MYC2
5gnj_N4e-1417621257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722ERKRRE
21823RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00503.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828299.11e-138PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0721e-45BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A022PS851e-117A0A022PS85_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.B00503.1.p1e-139(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-48bHLH family protein