PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00347.1.p
Common NameLOC105957355, MIMGU_mgv1a010618mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 308aa    MW: 33177.5 Da    PI: 7.0633
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00347.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-19142192256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +g+W++eIrdp     +  +r++lg+f  ae+Aa+a+++a+ k++g+
  Migut.B00347.1.p 142 NYRGVRQRP-WGKWASEIRDP-----HkaARVWLGTFENAEDAARAYDRAAIKYRGP 192
                       59*******.**********7.....337**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.32E-22141199No hitNo description
SMARTSM003809.2E-37142205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-32142199IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22142201IPR016177DNA-binding domain
PROSITE profilePS5103224.342142199IPR001471AP2/ERF domain
PfamPF008479.3E-12142191IPR001471AP2/ERF domain
PRINTSPR003673.3E-11143154IPR001471AP2/ERF domain
PRINTSPR003673.3E-11165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MQKSNKRIKQ DQSTSSNCTS NGGSTTAPLH FSPPRLTSEE EVSIMVSALK NVITGAAAEN  60
AGYEFCGSDH FRRAAAGGGF ISVSDDLETC RFCRINGCLG CNFFDDQENK SSHNNSNAPS  120
SAATPPPVAA AAEDGKKRKK KNYRGVRQRP WGKWASEIRD PHKAARVWLG TFENAEDAAR  180
AYDRAAIKYR GPRAKLNFPF SDYTAGGVGA ATSSIAAALT AASSSFCHQQ ENVVIEMQKK  240
RKQENFGEME IGSSSNNNNN NNYEINNYGD LVIGEDDIKE WLMMMDFDNG GSSSDSANGG  300
GINAHCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-25141200161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-25139200264ATERF1
3gcc_A6e-25139200264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135139KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B00347.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836735.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ062e-39EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A022RD850.0A0A022RD85_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.18e-34redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]