PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S061300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 269aa    MW: 30034.1 Da    PI: 8.7045
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S061300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.8e-19123177256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Manes.S061300.1.p 123 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 177
                        788899***********************************************98 PP

2HD-ZIP_I/II125.42.5e-40123212191
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  Manes.S061300.1.p 123 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 212
                        69*************************************************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.94E-19113180IPR009057Homeodomain-like
PROSITE profilePS5007117.734119179IPR001356Homeobox domain
SMARTSM003897.3E-16121183IPR001356Homeobox domain
PfamPF000463.7E-16123177IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.6E-18123177IPR009057Homeodomain-like
CDDcd000869.11E-17123180No hitNo description
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
SMARTSM003405.7E-26179222IPR003106Leucine zipper, homeobox-associated
PfamPF021835.0E-10179213IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGCLDDGLVL GLGFSATTTL EKRGNNNNEK PKMMNKPCFE PSLSLGLSGE TFYGCNKKTT  60
DIKKVCEESG GADLFRQASP HSAVSSFSSG RVKRERDLSS EEIEAERVSS RVSDEDEDAT  120
NTRKKLRLTK EQSALLEESF KQHSTLNPKQ KQALARQLNL RPRQVEVWFQ NRRARTKLKQ  180
TEVDCEFLKK CCETLTDENR RLQKELQELK ALKLAQPFYM HMPAATLTMC PSCERIGGVG  240
DGASKNNPFS IASKPHFYNP FTNPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127TRKKLRL
2171179RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S061300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602708.10.0homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-100HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A199UAN10.0A0A199UAN1_MANES; Uncharacterized protein
STRINGcassava4.1_013954m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.19e-87HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]