PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S010300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 245aa    MW: 26469 Da    PI: 7.9151
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S010300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.21e-41411401100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrrkCa++C+++pyf  ++p+kfa+vhk+FGasnv+k+l ++pe++r d+++slvyeA+ r+rdPvyG++g i++lqqq+++l++
  Manes.S010300.1.p  41 PCAACKLLRRKCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPESQRADTANSLVYEANLRLRDPVYGCMGAISALQQQIQSLQE 132
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        e++++++e
  Manes.S010300.1.p 133 EINSIRSE 140
                        ***99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.78440141IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-4141138IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSRDRDRFDE IGKKIKRDTD LSSEMGRRHI LTPGILNTVT PCAACKLLRR KCAEECPFSP  60
YFSPHEPQKF AAVHKVFGAS NVSKMLMEVP ESQRADTANS LVYEANLRLR DPVYGCMGAI  120
SALQQQIQSL QEEINSIRSE IIKHKYREAN TSIISSTEHH HPAALVSSGT LSSIVVPQNI  180
PPLSPAPPPP PPPPPPPPPP PPLSAPSSIV VSSSSSSSIS SLYTPPTSST GYSSISSDNV  240
PYFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-43321485118LOB family transfactor Ramosa2.1
5ly0_B4e-43321485118LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S010300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602074.11e-176LOB domain-containing protein 13-like isoform X1
SwissprotQ9AT613e-76LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A199UCG41e-175A0A199UCG4_MANES; Uncharacterized protein
STRINGcassava4.1_031391m1e-175(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22983486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.17e-73LOB domain-containing protein 15
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]