PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G018200.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family SRS
Protein Properties Length: 315aa    MW: 34605.2 Da    PI: 8.3122
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G018200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022304.1e-71892474153
               DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrelkskkq 83 
                          g+++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++          + +++kr re ++  +
  Manes.18G018200.2.p  89 GGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQEQQQQQhnqeqqqlqfRGENPKRLRE-NQGGA 177
                          789****************************************************99988887756665555544445555555.47789 PP

               DUF702  84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                          s+l++t+l++++s k le++++P+ev+s+avfrcvrvs++d+ +e++aYqtav+igGhvf+G+LydqG++
  Manes.18G018200.2.p 178 SSLACTRLATTTSGKGLEVAHFPPEVNSTAVFRCVRVSAMDEPDEQYAYQTAVNIGGHVFRGVLYDQGPD 247
                          99******************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.3E-6790247IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.9E-2792134IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.9E-26198246IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAGWFYLSGR EGATSKQEEE KEQHNNLFLY RSNEEIYNKG FEIWPQYYQQ QQNMNSYSSF  60
GVGPSRRSFS DESSRSGFTV MRQGGIGGGG MNCQDCGNQA KKDCAHLRCR TCCKSRGFQC  120
QTHVKSTWVP AAKRRERQQQ LAALQQEQQQ QQHNQEQQQL QFRGENPKRL RENQGGASSL  180
ACTRLATTTS GKGLEVAHFP PEVNSTAVFR CVRVSAMDEP DEQYAYQTAV NIGGHVFRGV  240
LYDQGPDGRY TSGGESSSGG VQQLNLITAA TTSPAATTTN ASNPGTGALL DPSLYPAPLN  300
AFIAGTQFFP PPRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G018200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0119660.0AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600802.10.0protein SHI RELATED SEQUENCE 5-like isoform X2
SwissprotQ9LQZ53e-98SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A2C9U0K50.0A0A2C9U0K5_MANES; Uncharacterized protein
STRINGcassava4.1_021201m1e-155(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-75SHI-related sequence 5
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]