PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G096200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 361aa    MW: 41489.5 Da    PI: 9.443
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G096200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.82e-13696298
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                         f +l+ s++ + + l++p +f++++g++   s   +l  + g +W v l   k ++++++ +GW+eF +   +++g f+vF+++g+  f  +
  Manes.17G096200.1.p  6 FHKLILSNTIRDKKLRIPDNFVKKFGND--LSAFGRLSVPGGPVWPVGL--IKADDKFWFHEGWQEFMERYSIRVGYFLVFRYEGHAVF--T 91
                         56677899999999***********877..777899*************..9*******************************998888..8 PP

                         EEEE- CS
                   B3 94 vkvfr 98
                         v++f+
  Manes.17G096200.1.p 92 VHIFN 96
                         88885 PP

2B356.55.2e-18259349498
                          E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          vl ps+  + ++++lp  fae++ +g++     ++l+  +g++W v++ yr+++    l++GW eF  +n+L egD+++F+l+++++  l
  Manes.17G096200.1.p 259 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLCDGKQWPVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCIFELMRSRDIVL 343
                          78899******************866743...48888999********665555..66*************************9999999 PP

                          EEEEE- CS
                   B3  93 vvkvfr 98 
                          +v+vfr
  Manes.17G096200.1.p 344 KVTVFR 349
                          999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-21397IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-21398IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-16496No hitNo description
PROSITE profilePS5086312.52598IPR003340B3 DNA binding domain
SMARTSM010197.0E-12698IPR003340B3 DNA binding domain
PfamPF023621.2E-10796IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-23248349IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-23250349IPR015300DNA-binding pseudobarrel domain
CDDcd100177.37E-22254349No hitNo description
PROSITE profilePS5086313.267256351IPR003340B3 DNA binding domain
SMARTSM010191.0E-18256351IPR003340B3 DNA binding domain
PfamPF023624.9E-16259349IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MPRPYFHKLI LSNTIRDKKL RIPDNFVKKF GNDLSAFGRL SVPGGPVWPV GLIKADDKFW  60
FHEGWQEFME RYSIRVGYFL VFRYEGHAVF TVHIFNLSAS EINYQSNALS GRRFLAFEEM  120
GDDDFVEYLS SSSPYLLPNS LKRNVLLSKG DSISQVTNQA TRDVGVQFNA IEMKNYADDV  180
KFYVPDGEIQ KPKKQGRKKR KIDPNEQQPP ASQEDEAEMR FRFYESASAR KRTVTAEERE  240
RAINAAKAFE PINPFCRVVL RPSYLYRGCI MYLPSCFAEK NLNGVSGFIK LQLCDGKQWP  300
VRCLYRGGRA KLSQGWYEFT LENNLGEGDV CIFELMRSRD IVLKVTVFRV LESAGLVNRP  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-7422235215144B3 domain-containing transcription factor VRN1
4i1k_B2e-7422235215144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191200PKKQGRKKRK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G096200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599860.10.0B3 domain-containing transcription factor VRN1-like isoform X2
SwissprotQ8L3W11e-141VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A2C9U6Q90.0A0A2C9U6Q9_MANES; Uncharacterized protein
STRINGcassava4.1_010446m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-132B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]